- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.60 Å
- Oligo State
- homo-tetramer
- Ligands
- 1 x XYN: 3-[(carboxymethyl)sulfanyl]-2-oxopropanoic acid(Non-covalent)
- 19 x MPD: (4S)-2-METHYL-2,4-PENTANEDIOL(Non-functional Binders)
MPD.2: 7 residues within 4Å:- Chain A: P.99, K.101, A.282, M.283, D.286, A.294, E.298
Ligand excluded by PLIPMPD.3: 9 residues within 4Å:- Chain A: G.123, L.124, I.142, L.175, Q.179, T.223, N.224, L.225, L.226
Ligand excluded by PLIPMPD.4: 5 residues within 4Å:- Chain A: T.121, E.122, S.143, K.145
- Chain D: L.133
Ligand excluded by PLIPMPD.5: 6 residues within 4Å:- Chain A: I.13, G.242, H.260, I.266, N.273, D.313
Ligand excluded by PLIPMPD.6: 3 residues within 4Å:- Chain A: R.4, K.58, S.61
Ligand excluded by PLIPMPD.8: 10 residues within 4Å:- Chain B: G.123, L.124, A.140, I.142, L.175, Q.179, T.223, N.224, L.225, L.226
Ligand excluded by PLIPMPD.9: 5 residues within 4Å:- Chain B: K.101, M.283, A.294, E.298
- Ligands: MPD.12
Ligand excluded by PLIPMPD.10: 6 residues within 4Å:- Chain B: I.13, H.260, I.266, A.272, N.273, D.313
Ligand excluded by PLIPMPD.11: 7 residues within 4Å:- Chain B: T.121, E.122, S.143, K.145, A.146
- Chain C: Y.132, L.133
Ligand excluded by PLIPMPD.12: 4 residues within 4Å:- Chain B: I.157, M.283, D.286
- Ligands: MPD.9
Ligand excluded by PLIPMPD.13: 2 residues within 4Å:- Chain B: E.54
- Ligands: MPD.14
Ligand excluded by PLIPMPD.14: 5 residues within 4Å:- Chain B: R.4, V.35, K.58, S.61
- Ligands: MPD.13
Ligand excluded by PLIPMPD.15: 6 residues within 4Å:- Chain C: R.85, R.88, R.118, Y.125, D.228
- Chain D: K.171
Ligand excluded by PLIPMPD.16: 9 residues within 4Å:- Chain C: G.123, L.124, A.140, T.178, Q.179, T.223, N.224, L.225, L.226
Ligand excluded by PLIPMPD.17: 7 residues within 4Å:- Chain C: P.99, K.101, R.103, M.283, D.286, A.294, E.298
Ligand excluded by PLIPMPD.18: 7 residues within 4Å:- Chain C: I.13, G.242, H.260, I.266, A.272, N.273, D.313
Ligand excluded by PLIPMPD.20: 9 residues within 4Å:- Chain D: G.123, L.124, A.140, T.178, Q.179, T.223, N.224, L.225, L.226
Ligand excluded by PLIPMPD.21: 5 residues within 4Å:- Chain D: G.242, H.260, A.272, N.273, D.313
Ligand excluded by PLIPMPD.22: 8 residues within 4Å:- Chain D: P.99, L.279, A.282, M.283, D.286, A.294, K.295, E.298
Ligand excluded by PLIP- 2 x XYM: (2Z)-3-[(carboxymethyl)sulfanyl]-2-hydroxyprop-2-enoic acid(Non-covalent)
XYM.7: 11 residues within 4Å:- Chain A: K.171, V.174, D.204
- Chain B: R.85, R.88, R.98, R.118, Y.125, D.228, D.232, V.259
11 PLIP interactions:9 interactions with chain B, 2 interactions with chain A- Hydrogen bonds: B:R.88, B:R.88, B:R.118, B:D.228, A:D.204
- Water bridges: B:N.96, B:R.98
- Salt bridges: B:R.85, B:R.98, B:R.118, A:K.171
XYM.19: 9 residues within 4Å:- Chain C: K.171, D.204
- Chain D: R.88, R.98, R.118, Y.125, D.228, D.232, V.259
10 PLIP interactions:7 interactions with chain D, 3 interactions with chain C- Hydrogen bonds: D:R.88, D:R.88, D:R.118, D:Y.125, D:D.228, C:D.204
- Salt bridges: D:R.98, D:R.118, C:K.171
- Water bridges: C:N.173
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Nango, E. et al., Structure of Thermus thermophilus homoisocitrate dehydrogenase in complex with a designed inhibitor. J.Biochem. (2011)
- Release Date
- 2011-09-21
- Peptides
- Homoisocitrate dehydrogenase: ABCD
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
BC
CD
D
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.60 Å
- Oligo State
- homo-tetramer
- Ligands
- 1 x XYN: 3-[(carboxymethyl)sulfanyl]-2-oxopropanoic acid(Non-covalent)
- 19 x MPD: (4S)-2-METHYL-2,4-PENTANEDIOL(Non-functional Binders)
- 2 x XYM: (2Z)-3-[(carboxymethyl)sulfanyl]-2-hydroxyprop-2-enoic acid(Non-covalent)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Nango, E. et al., Structure of Thermus thermophilus homoisocitrate dehydrogenase in complex with a designed inhibitor. J.Biochem. (2011)
- Release Date
- 2011-09-21
- Peptides
- Homoisocitrate dehydrogenase: ABCD
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
BC
CD
D