SMTL ID : 3at2.1

Crystal structure of CK2alpha

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.60 Å

Oligo State

monomer

Ligands

11 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.1: 8 residues within 4Å: Chain A: N.123, T.124, D.125, F.126, P.164, V.167, M.168, I.169 6 PLIP interactions: 6 interactions with chain A Hydrogen bonds: A:T.124, A:F.126, A:I.169 Water bridges: A:N.123, A:D.125, A:D.125 EDO.2: 3 residues within 4Å: Chain A: V.71, F.118, I.179 No protein-ligand interaction detected (PLIP) EDO.3: 7 residues within 4Å: Chain A: K.82, R.85, R.160, L.183, N.194, R.196, V.197 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:R.85, A:R.85, A:R.160 EDO.4: 5 residues within 4Å: Chain A: K.234, F.237, F.238, V.253, F.289 1 PLIP interactions: 1 interactions with chain A Water bridges: A:R.249 EDO.5: 7 residues within 4Å: Chain A: V.16, H.153, Y.216, S.217, M.220, T.319, A.320 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:A.320 Water bridges: A:D.150, A:S.217, A:T.319 EDO.6: 6 residues within 4Å: Chain A: F.126, P.164, Y.201, F.202, E.235, P.236 No protein-ligand interaction detected (PLIP) EDO.7: 7 residues within 4Å: Chain A: N.122, N.123, T.124, I.169, D.170, H.171, E.172 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:T.124, A:I.169, A:H.171, A:E.172 EDO.8: 5 residues within 4Å: Chain A: T.132, T.134, D.137, H.171, R.174 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:D.137 EDO.9: 9 residues within 4Å: Chain A: Q.41, Y.44, L.46, V.72, I.74, V.106, D.108, A.115 Ligands: EDO.11 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:Y.44, A:D.108 EDO.10: 4 residues within 4Å: Chain A: Q.41, D.42, Y.44, I.64 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:Q.41, A:Q.41 Water bridges: A:Y.44 EDO.11: 6 residues within 4Å: Chain A: L.46, I.74, D.108, P.109, V.110 Ligands: EDO.9 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:D.108, A:V.110 Water bridges: A:S.111

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Kinoshita, T. et al., A detailed thermodynamic profile of cyclopentyl and isopropyl derivatives binding to CK2 kinase. Mol.Cell.Biochem. (2011)

Release Date

2011-11-09

Peptides

Casein kinase II subunit alpha: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Casein kinase II subunit alpha

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