SMTL ID : 3atg.1

endo-1,3-beta-glucanase from Cellulosimicrobium cellulans

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.66 Å

Oligo State

monomer

Ligands

5 x PO4: PHOSPHATE ION(Non-functional Binders)

PO4.1: 5 residues within 4Å: Chain A: D.9, F.11, D.12, N.20, L.50 6 PLIP interactions: 6 interactions with chain A Hydrogen bonds: A:D.12, A:N.20 Water bridges: A:D.9, A:D.9, A:E.10, A:N.20 PO4.2: 5 residues within 4Å: Chain A: G.32, W.33, R.72, W.103, F.109 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:G.32 Water bridges: A:R.72, A:R.72 Salt bridges: A:R.72 PO4.3: 3 residues within 4Å: Chain A: F.185, H.186, R.187 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:R.187 Salt bridges: A:H.186 PO4.4: 4 residues within 4Å: Chain A: H.131, R.132, Q.153, H.154 3 PLIP interactions: 3 interactions with chain A Salt bridges: A:H.131, A:R.132, A:H.154 PO4.5: 1 residues within 4Å: Chain A: S.44 2 PLIP interactions: 2 interactions with chain A Water bridges: A:S.44, A:R.45

3 x GOL: GLYCEROL(Non-functional Binders)

GOL.6: 6 residues within 4Å: Chain A: W.99, A.101, W.103, E.119, D.121, E.124 7 PLIP interactions: 7 interactions with chain A Hydrogen bonds: A:E.124 Water bridges: A:R.72, A:R.72, A:E.124, A:E.124, A:N.209, A:N.209 GOL.7: 5 residues within 4Å: Chain A: P.21, W.24, N.25, H.26, A.43 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:W.24, A:H.26, A:H.26 Water bridges: A:H.26 GOL.8: 5 residues within 4Å: Chain A: G.16, A.49, L.50, D.51, V.57 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:G.16, A:T.59, A:T.59 Water bridges: A:A.49

1 x CA: CALCIUM ION(Non-covalent)

CA.9: 3 residues within 4Å: Chain A: E.10, G.54, D.233 5 PLIP interactions: 4 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:E.10, A:G.54, A:D.233, A:D.233, H2O.4

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Oda, M. et al., Structural and thermodynamic characterization of endo-1,3-beta-glucanase: Insights into the substrate recognition mechanism. Biochim. Biophys. Acta (2018)

Release Date

2012-01-18

Peptides

GLUCANASE: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

GLUCANASE