SMTL ID : 3att.1

Crystal structure of Rv3168 with ATP

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.00 Å

Oligo State

monomer

Ligands

2 x MG: MAGNESIUM ION(Non-covalent)

MG.1: 5 residues within 4Å: Chain A: D.246, E.248 Ligands: MG.2, ACT.4, ATP.7 3 PLIP interactions: 3 interactions with chain A Metal complexes: A:D.246, A:D.246, A:E.248 MG.2: 4 residues within 4Å: Chain A: N.233, D.246 Ligands: MG.1, ATP.7 1 PLIP interactions: 1 interactions with chain A Metal complexes: A:D.246

2 x CA: CALCIUM ION(Non-covalent)

CA.3: 2 residues within 4Å: Chain A: G.354, E.356 3 PLIP interactions: 3 interactions with chain A Metal complexes: A:G.354, A:E.356, A:E.356 CA.5: 2 residues within 4Å: Chain A: G.85, T.88 3 PLIP interactions: 2 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:G.85, A:T.88, H2O.3

1 x ACT: ACETATE ION(Non-functional Binders)

ACT.4: 5 residues within 4Å: Chain A: D.228, R.230, D.246, E.248 Ligands: MG.1 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:D.228, A:D.228

1 x GOL: GLYCEROL(Non-functional Binders)

GOL.6: 7 residues within 4Å: Chain A: F.69, T.71, Y.72, R.73, Q.77, W.184, E.248 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:R.73, A:Q.77, A:W.184 Water bridges: A:T.71

1 x ATP: ADENOSINE-5'-TRIPHOSPHATE(Non-covalent)

ATP.7: 17 residues within 4Å: Chain A: T.37, V.56, R.58, P.93, M.112, D.113, Y.114, V.115, V.119, R.230, N.233, L.235, L.245, D.246, E.248 Ligands: MG.1, MG.2 11 PLIP interactions: 11 interactions with chain A Hydrogen bonds: A:T.37, A:D.113, A:V.115, A:R.230 Water bridges: A:R.58, A:R.58, A:R.58, A:Y.114, A:D.246 Salt bridges: A:R.58, A:R.58

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Kim, S. et al., Crystal structure of Mycobacterium tuberculosis Rv3168: a putative aminoglycoside antibiotics resistance enzyme. Proteins (2011)

Release Date

2011-08-03

Peptides

Putative uncharacterized protein: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Putative uncharacterized protein

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