SMTL ID : 3aut.1

Crystal structure of Bacillus megaterium glucose dehydrogenase 4 in complex with NADH

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.00 Å

Oligo State

homo-tetramer

Ligands

2 x NAI: 1,4-DIHYDRONICOTINAMIDE ADENINE DINUCLEOTIDE(Non-covalent)

NAI.1: 27 residues within 4Å: Chain B: G.22, T.25, G.26, L.27, N.45, Y.47, G.72, D.73, V.74, N.100, A.101, G.102, V.103, T.123, M.151, S.152, S.153, Y.166, K.170, P.196, G.197, A.198, M.199, T.201, P.202, I.203, N.204 18 PLIP interactions: 18 interactions with chain B Hydrophobic interactions: B:P.196 Hydrogen bonds: B:T.25, B:T.25, B:T.25, B:L.27, B:D.73, B:V.74, B:N.100, B:G.102, B:K.170, B:M.199, B:M.199, B:T.201, B:N.204 Water bridges: B:G.28, B:Y.47, B:T.75, B:N.100 NAI.2: 27 residues within 4Å: Chain D: G.22, T.25, G.26, L.27, N.45, Y.47, G.72, D.73, V.74, N.100, A.101, G.102, V.103, T.123, M.151, S.152, S.153, Y.166, K.170, P.196, G.197, A.198, M.199, T.201, P.202, I.203, N.204 17 PLIP interactions: 17 interactions with chain D Hydrophobic interactions: D:P.196 Hydrogen bonds: D:T.25, D:T.25, D:L.27, D:D.73, D:D.73, D:V.74, D:N.100, D:G.102, D:Y.166, D:K.170, D:M.199, D:M.199, D:N.204 Water bridges: D:G.28, D:Y.47, D:N.100

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Nishioka, T. et al., Structure-guided mutagenesis for the improvement of substrate specificity of Bacillus megaterium glucose 1-dehydrogenase IV. Febs J. (2012)

Release Date

2012-02-22

Peptides

Glucose 1-dehydrogenase 4: ABCD

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
A

D
B

Glucose 1-dehydrogenase 4

Related Entries With Identical Sequence