SMTL ID : 3av5.1

Crystal structure of mouse DNA methyltransferase 1 with AdoHcy

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 3.25 Å

Oligo State

monomer

Ligands

4 x ZN: ZINC ION(Non-covalent)

ZN.1: 4 residues within 4Å: Chain A: C.69, C.72, C.130, H.134 4 PLIP interactions: 4 interactions with chain A Metal complexes: A:C.69, A:C.72, A:C.130, A:H.134 ZN.2: 4 residues within 4Å: Chain A: C.366, C.369, C.372, C.404 4 PLIP interactions: 4 interactions with chain A Metal complexes: A:C.366, A:C.369, A:C.372, A:C.404 ZN.3: 4 residues within 4Å: Chain A: H.506, C.533, C.607, C.610 4 PLIP interactions: 4 interactions with chain A Metal complexes: A:H.506, A:C.533, A:C.607, A:C.610 ZN.4: 4 residues within 4Å: Chain A: C.1189, C.1191, C.1197, H.1214 4 PLIP interactions: 4 interactions with chain A Metal complexes: A:C.1189, A:C.1191, A:C.1197, A:H.1214

1 x SAH: S-ADENOSYL-L-HOMOCYSTEINE(Non-covalent)

SAH.5: 21 residues within 4Å: Chain A: D.856, F.858, S.859, G.860, C.861, G.862, G.863, L.864, I.880, E.881, M.882, W.883, E.902, D.903, C.904, G.936, P.938, L.960, N.1290, A.1291, V.1292 13 PLIP interactions: 13 interactions with chain A Hydrogen bonds: A:F.858, A:C.861, A:G.862, A:G.863, A:L.864, A:M.882, A:W.883, A:D.903, A:D.903, A:C.904, A:N.1290, A:V.1292 pi-Stacking: A:F.858

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Takeshita, K. et al., Structural insight into maintenance methylation by mouse DNA methyltransferase 1 (Dnmt1). Proc.Natl.Acad.Sci.USA (2011)

Release Date

2011-05-04

Peptides

DNA (cytosine-5)-methyltransferase 1: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

DNA (cytosine-5)-methyltransferase 1

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