- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 1.92 Å
- Oligo State
- homo-dimer
- Ligands
- 2 x PRO: PROLINE(Non-covalent)
- 2 x FAD: FLAVIN-ADENINE DINUCLEOTIDE(Non-covalent)
FAD.2: 37 residues within 4Å:- Chain A: V.29, G.30, G.32, V.33, V.34, V.53, D.54, A.55, S.61, G.62, D.63, S.64, R.66, S.67, M.68, A.69, A.70, R.202, R.203, V.204, A.249, A.250, G.251, W.253, R.272, V.274, Q.322, G.370, H.371, Y.372, T.396, G.398, S.399, G.400, I.401, M.402
- Ligands: PRO.1
28 PLIP interactions:28 interactions with chain A- Hydrophobic interactions: A:R.272, A:V.274, A:Y.372
- Hydrogen bonds: A:G.32, A:V.34, A:A.55, A:G.56, A:S.61, A:G.62, A:D.63, A:S.64, A:S.64, A:A.70, A:A.70, A:V.204, A:V.204, A:G.400, A:I.401
- Water bridges: A:A.31, A:G.35, A:G.60, A:S.61, A:D.63, A:G.251, A:D.373, A:T.396, A:G.398
- pi-Stacking: A:Y.372
FAD.10: 37 residues within 4Å:- Chain B: V.29, G.30, G.32, V.33, V.34, V.53, D.54, A.55, S.61, G.62, D.63, S.64, R.66, S.67, M.68, A.69, A.70, R.202, R.203, V.204, A.249, A.250, G.251, W.253, R.272, V.274, Q.322, G.370, H.371, Y.372, T.396, G.398, S.399, G.400, I.401, M.402
- Ligands: PRO.9
28 PLIP interactions:28 interactions with chain B- Hydrophobic interactions: B:R.272, B:V.274, B:Y.372
- Hydrogen bonds: B:G.32, B:V.34, B:A.55, B:G.56, B:S.61, B:G.62, B:D.63, B:S.64, B:S.64, B:A.70, B:A.70, B:V.204, B:V.204, B:T.396, B:G.400, B:I.401
- Water bridges: B:A.31, B:G.35, B:G.60, B:S.61, B:G.251, B:D.373, B:T.396, B:G.398
- pi-Stacking: B:Y.372
- 12 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)
EDO.3: 5 residues within 4Å:- Chain A: F.177, L.178, R.311, R.315, W.320
3 PLIP interactions:3 interactions with chain A- Hydrogen bonds: A:L.178, A:R.311, A:R.311
EDO.4: 4 residues within 4Å:- Chain A: P.385, W.386
- Ligands: EDO.7, EDO.8
1 PLIP interactions:1 interactions with chain A- Hydrogen bonds: A:W.386
EDO.5: 7 residues within 4Å:- Chain A: D.325, L.327, G.328, Y.343
- Chain B: P.221, L.222, P.223
3 PLIP interactions:1 interactions with chain B, 2 interactions with chain A- Hydrogen bonds: B:P.221, A:D.325, A:R.329
EDO.6: 8 residues within 4Å:- Chain A: G.251, V.252, N.255, T.265, S.267, R.268, P.269, D.373
2 PLIP interactions:2 interactions with chain A- Hydrogen bonds: A:T.265, A:R.268
EDO.7: 8 residues within 4Å:- Chain B: I.374, S.375, F.376, D.377, A.378, Q.443
- Ligands: EDO.4, EDO.8
No protein-ligand interaction detected (PLIP)EDO.8: 7 residues within 4Å:- Chain A: I.263, D.264, F.266, F.383, W.386
- Ligands: EDO.4, EDO.7
1 PLIP interactions:1 interactions with chain A- Hydrogen bonds: A:D.264
EDO.11: 5 residues within 4Å:- Chain B: F.177, L.178, R.311, R.315, W.320
3 PLIP interactions:3 interactions with chain B- Hydrogen bonds: B:L.178, B:R.311, B:R.311
EDO.12: 4 residues within 4Å:- Chain B: P.385, W.386
- Ligands: EDO.15, EDO.16
1 PLIP interactions:1 interactions with chain B- Hydrogen bonds: B:W.386
EDO.13: 7 residues within 4Å:- Chain A: P.221, L.222, P.223
- Chain B: D.325, L.327, G.328, Y.343
4 PLIP interactions:1 interactions with chain A, 3 interactions with chain B- Hydrogen bonds: A:P.221, B:D.325, B:D.325, B:R.329
EDO.14: 8 residues within 4Å:- Chain B: G.251, V.252, N.255, T.265, S.267, R.268, P.269, D.373
2 PLIP interactions:2 interactions with chain B- Hydrogen bonds: B:R.268, B:D.373
EDO.15: 8 residues within 4Å:- Chain A: I.374, S.375, F.376, D.377, A.378, Q.443
- Ligands: EDO.12, EDO.16
No protein-ligand interaction detected (PLIP)EDO.16: 7 residues within 4Å:- Chain B: I.263, D.264, F.266, F.383, W.386
- Ligands: EDO.12, EDO.15
1 PLIP interactions:1 interactions with chain B- Hydrogen bonds: B:D.264
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Sakuraba, H. et al., Crystal Structure of Novel Dye-linked L-Proline Dehydrogenase from Hyperthermophilic Archaeon Aeropyrum pernix. J.Biol.Chem. (2012)
- Release Date
- 2012-04-04
- Peptides
- Putative oxidoreductase: AB
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
A
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 1.92 Å
- Oligo State
- homo-dimer
- Ligands
- 2 x PRO: PROLINE(Non-covalent)
- 2 x FAD: FLAVIN-ADENINE DINUCLEOTIDE(Non-covalent)
- 12 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Sakuraba, H. et al., Crystal Structure of Novel Dye-linked L-Proline Dehydrogenase from Hyperthermophilic Archaeon Aeropyrum pernix. J.Biol.Chem. (2012)
- Release Date
- 2012-04-04
- Peptides
- Putative oxidoreductase: AB
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
A