SMTL ID : 3ayu.1

Crystal structure of MMP-2 active site mutant in complex with APP-drived decapeptide inhibitor

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.00 Å

Oligo State

hetero-1-1-mer

Ligands

2 x ZN: ZINC ION(Non-covalent)

ZN.1: 4 residues within 4Å: Chain A: H.120, H.124, H.130 Chain B: D.6 5 PLIP interactions: 3 interactions with chain A, 2 interactions with chain B Metal complexes: A:H.120, A:H.124, A:H.130, B:D.6, B:D.6 ZN.2: 4 residues within 4Å: Chain A: H.69, D.71, H.84, H.97 4 PLIP interactions: 4 interactions with chain A Metal complexes: A:H.69, A:D.71, A:H.84, A:H.97

3 x CA: CALCIUM ION(Non-covalent)

CA.3: 6 residues within 4Å: Chain A: D.76, G.77, D.79, L.81, D.99, E.102 6 PLIP interactions: 6 interactions with chain A Metal complexes: A:D.76, A:G.77, A:D.79, A:L.81, A:D.99, A:E.102 CA.4: 5 residues within 4Å: Chain A: D.59, G.91, V.92, G.93, D.95 6 PLIP interactions: 4 interactions with chain A, 2 Ligand-Water interactions Metal complexes: A:D.59, A:G.91, A:G.93, A:D.95, H2O.2, H2O.6 CA.5: 4 residues within 4Å: Chain A: T.23, D.25, D.100, E.102 5 PLIP interactions: 4 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:D.25, A:D.100, A:D.100, A:E.102, H2O.2

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Hashimoto, H. et al., Structural basis for matrix metalloproteinase-2 (MMP-2)-selective inhibitory action of {beta}-amyloid precursor protein-derived inhibitor. J.Biol.Chem. (2011)

Release Date

2011-08-03

Peptides

72 kDa type IV collagenase: A
Amyloid beta A4 protein: B

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

72 kDa type IV collagenase

Amyloid beta A4 protein