SMTL ID : 3az2.1

Crystal Structure Analysis of Vitamin D receptor

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.69 Å

Oligo State

monomer

Ligands

1 x DS3: 5-{4-[3-(4-{[(2R)-2-hydroxy-3,3-dimethylbutyl]oxy}-3-methylphenyl)pentan-3-yl]-2-methylphenoxy}pentanoic acid(Non-covalent)

DS3.1: 27 residues within 4Å: Chain A: T.23, Y.24, F.31, L.57, L.60, A.61, L.63, V.64, Y.66, S.67, K.70, I.101, M.102, R.104, S.105, S.108, W.116, C.118, Y.125, V.130, H.135, L.139, H.227, Y.231, L.234, L.244, F.252 27 PLIP interactions: 27 interactions with chain A Hydrophobic interactions: A:Y.24, A:F.31, A:L.57, A:L.60, A:L.60, A:A.61, A:L.63, A:L.63, A:V.64, A:Y.66, A:I.101, A:W.116, A:W.116, A:W.116, A:W.116, A:Y.125, A:V.130, A:V.130, A:L.139, A:Y.231, A:L.234, A:L.244, A:F.252 Hydrogen bonds: A:S.67, A:H.135 Water bridges: A:D.25 Salt bridges: A:R.104

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Kashiwagi, H. et al., Novel nonsecosteroidal vitamin D(3) carboxylic acid analogs for osteoporosis, and SAR analysis. Bioorg.Med.Chem. (2011)

Release Date

2011-11-02

Peptides

Vitamin D3 receptor: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Vitamin D3 receptor

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