SMTL ID : 3b07.1

Crystal structure of octameric pore form of gamma-hemolysin from Staphylococcus aureus

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.50 Å

Oligo State

hetero-4-4-mer

Ligands

4 x MPD: (4S)-2-METHYL-2,4-PENTANEDIOL(Non-functional Binders)

MPD.1: 8 residues within 4Å: Chain A: N.183, W.186, Y.189, E.201, L.204, A.205, G.206, R.207 5 PLIP interactions: 5 interactions with chain A Hydrophobic interactions: A:W.186, A:W.186, A:W.186 Hydrogen bonds: A:Y.189, A:A.205 MPD.2: 8 residues within 4Å: Chain B: N.183, W.186, Y.189, E.201, L.204, A.205, G.206, R.207 6 PLIP interactions: 6 interactions with chain B Hydrophobic interactions: B:W.186, B:W.186, B:L.204 Hydrogen bonds: B:Y.189, B:Y.189, B:E.201 MPD.3: 8 residues within 4Å: Chain C: N.183, W.186, Y.189, E.201, L.204, A.205, G.206, R.207 7 PLIP interactions: 7 interactions with chain C Hydrophobic interactions: C:W.186, C:W.186, C:W.186, C:L.204 Hydrogen bonds: C:Y.189, C:Y.189, C:L.204 MPD.4: 8 residues within 4Å: Chain D: N.183, W.186, Y.189, E.201, L.204, A.205, G.206, R.207 7 PLIP interactions: 7 interactions with chain D Hydrophobic interactions: D:W.186, D:W.186, D:W.186, D:L.204 Hydrogen bonds: D:Y.189, D:Y.189, D:E.201

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Yamashita, K. et al., Crystal structure of the octameric pore of staphylococcal gamma-hemolysin reveals the beta-barrel pore formation mechanism by two components. Proc.Natl.Acad.Sci.USA (2011)

Release Date

2011-10-12

Peptides

Gamma-hemolysin component B: ABCD
Gamma-hemolysin component A: EFGH

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
C

C
E

D
G

E
B

F
D

G
F

H
H

Gamma-hemolysin component B

Gamma-hemolysin component A

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