SMTL ID : 3b0t.1

Human VDR ligand binding domain in complex with maxacalcitol

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.30 Å

Oligo State

monomer

Ligands

1 x MCZ: (1S,3R,5Z,7E,14beta,17alpha,20S)-20-(3-hydroxy-3-methylbutoxy)-9,10-secopregna-5,7,10-triene-1,3-diol(Non-covalent)

MCZ.1: 17 residues within 4Å: Chain A: Y.25, Y.29, L.58, L.64, V.65, S.68, I.102, R.105, S.106, S.109, W.117, C.119, V.131, H.136, L.140, L.144, H.228 14 PLIP interactions: 14 interactions with chain A Hydrophobic interactions: A:Y.25, A:L.58, A:L.64, A:L.64, A:W.117, A:V.131, A:L.140, A:L.144 Hydrogen bonds: A:Y.25, A:Y.25, A:S.68, A:R.105, A:S.109, A:H.136

1 x SO4: SULFATE ION(Non-functional Binders)

SO4.2: 5 residues within 4Å: Chain A: Q.238, P.239, E.240, C.241, S.242 6 PLIP interactions: 6 interactions with chain A Hydrogen bonds: A:E.240, A:C.241, A:S.242, A:S.242, A:S.242 Water bridges: A:Q.238

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Shimizu, T., Human VDR ligand binding domain in complex with maxacalcitol. To be Published

Release Date

2011-08-10

Peptides

Vitamin D3 receptor: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Vitamin D3 receptor