SMTL ID : 3b12.1

Crystal Structure of the Fluoroacetate Dehalogenase D104 mutant from Burkholderia sp. FA1 in complex with fluoroacetate

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.20 Å

Oligo State

homo-dimer

Ligands

3 x FAH: fluoroacetic acid(Non-covalent)

FAH.1: 10 residues within 4Å: Chain A: A.104, R.105, R.108, D.128, I.129, Y.147, H.149, W.150, Y.212, H.271 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:Y.212 Salt bridges: A:R.105, A:R.108, A:H.149 FAH.3: 10 residues within 4Å: Chain B: A.104, R.105, R.108, D.128, I.129, Y.147, H.149, W.150, Y.212, H.271 3 PLIP interactions: 3 interactions with chain B Salt bridges: B:R.105, B:R.108, B:H.149 FAH.4: 5 residues within 4Å: Chain B: H.111, Y.133, D.223, L.227, R.258 4 PLIP interactions: 4 interactions with chain B Water bridges: B:G.228, B:R.229 Salt bridges: B:H.111, B:R.258

2 x MG: MAGNESIUM ION(Non-covalent)

MG.2: 6 residues within 4Å: Chain A: Y.77, S.78, F.79, D.211, A.214, D.219 3 PLIP interactions: 3 interactions with chain A Metal complexes: A:Y.77, A:D.211, A:D.219 MG.5: 6 residues within 4Å: Chain B: Y.77, S.78, F.79, D.211, A.214, D.219 3 PLIP interactions: 3 interactions with chain B Metal complexes: B:Y.77, B:D.211, B:D.219

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Nakayama, T. et al., Substrate specificity of fluoroacetate dehalogenase: an insight from crystallographic analysis, fluorescence spectroscopy, and theoretical computations. Chemistry (2012)

Release Date

2012-06-20

Peptides

Fluoroacetate dehalogenase: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Fluoroacetate dehalogenase