SMTL ID : 3b18.1 (1 other biounit)

Rv0098 of Mycobacterium tuberculosis with ordered loop between beta-4 and beta-5

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.75 Å

Oligo State

homo-hexamer

Ligands

6 x DAO: LAURIC ACID(Non-covalent)

DAO.1: 12 residues within 4Å: Chain A: N.83, A.86, Y.87, F.90, L.102, Y.110, M.118, I.120, L.155, L.177, A.179 Chain D: N.74 11 PLIP interactions: 10 interactions with chain A, 1 interactions with chain D Hydrophobic interactions: A:A.86, A:Y.87, A:F.90, A:F.90, A:L.102, A:M.118, A:L.155, A:L.177, A:L.177, A:A.179 Water bridges: D:Y.66 DAO.2: 12 residues within 4Å: Chain B: N.83, A.86, Y.87, F.90, L.102, Y.110, M.118, I.120, L.155, L.177, A.179 Chain E: N.74 11 PLIP interactions: 10 interactions with chain B, 1 interactions with chain E Hydrophobic interactions: B:A.86, B:Y.87, B:F.90, B:F.90, B:L.102, B:M.118, B:L.155, B:L.177, B:L.177, B:A.179 Water bridges: E:Y.66 DAO.3: 12 residues within 4Å: Chain C: N.83, A.86, Y.87, F.90, L.102, Y.110, M.118, I.120, L.155, L.177, A.179 Chain F: N.74 11 PLIP interactions: 11 interactions with chain C Hydrophobic interactions: C:A.86, C:Y.87, C:F.90, C:F.90, C:L.102, C:M.118, C:L.155, C:L.177, C:L.177, C:A.179 Hydrogen bonds: C:Y.87 DAO.4: 12 residues within 4Å: Chain A: N.74 Chain D: N.83, A.86, Y.87, F.90, L.102, Y.110, M.118, I.120, L.155, L.177, A.179 11 PLIP interactions: 10 interactions with chain D, 1 interactions with chain A Hydrophobic interactions: D:A.86, D:Y.87, D:F.90, D:F.90, D:L.102, D:M.118, D:L.155, D:L.177, D:L.177, D:A.179 Water bridges: A:Y.66 DAO.5: 12 residues within 4Å: Chain B: N.74 Chain E: N.83, A.86, Y.87, F.90, L.102, Y.110, M.118, I.120, L.155, L.177, A.179 11 PLIP interactions: 11 interactions with chain E Hydrophobic interactions: E:A.86, E:Y.87, E:F.90, E:F.90, E:L.102, E:M.118, E:L.155, E:L.177, E:L.177, E:A.179 Hydrogen bonds: E:Y.87 DAO.6: 12 residues within 4Å: Chain C: N.74 Chain F: N.83, A.86, Y.87, F.90, L.102, Y.110, M.118, I.120, L.155, L.177, A.179 11 PLIP interactions: 10 interactions with chain F, 1 interactions with chain C Hydrophobic interactions: F:A.86, F:Y.87, F:F.90, F:F.90, F:L.102, F:M.118, F:L.155, F:L.177, F:L.177, F:A.179 Water bridges: C:Y.66

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Maity, K. et al., Insights into the substrate specificity of a thioesterase Rv0098 of mycobacterium tuberculosis through X-ray crystallographic and molecular dynamics studies. J.Biomol.Struct.Dyn. (2012)

Release Date

2012-06-06

Peptides

Uncharacterized protein Rv0098/MT0107: ABCDEF

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
A

C
A

D
A

E
A

F
A

Uncharacterized protein Rv0098/MT0107

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