SMTL ID : 3b1k.1

Crystal structure of Glyceraldehyde-3-Phosphate Dehydrogenase complexed with CP12 in the absence of copper from Synechococcus elongatus

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 3.30 Å

Oligo State

hetero-4-4-mer

Ligands

4 x NAD: NICOTINAMIDE-ADENINE-DINUCLEOTIDE(Non-covalent)

NAD.1: 23 residues within 4Å: Chain A: G.9, G.11, R.12, I.13, N.35, N.36, T.37, R.80, S.98, T.99, G.100, V.101, F.102, T.122, A.123, C.155, L.186, N.318, E.319 Chain C: D.16, Y.23 Chain F: S.194 Chain H: E.19 13 PLIP interactions: 1 interactions with chain C, 10 interactions with chain A, 2 interactions with chain F Hydrogen bonds: C:Y.23, A:R.12, A:I.13, A:N.35, A:N.36, A:T.37, A:R.80, A:G.100, A:E.319, F:S.194, F:S.194 Hydrophobic interactions: A:I.13, A:I.13 NAD.2: 23 residues within 4Å: Chain B: G.9, F.10, G.11, R.12, I.13, N.35, N.36, T.37, D.79, R.80, S.98, T.99, G.100, T.122, S.154, C.155, L.186, N.318 Chain D: D.16, Y.23, D.25 Chain E: S.194 Chain G: E.19 15 PLIP interactions: 10 interactions with chain B, 3 interactions with chain D, 1 interactions with chain E, 1 interactions with chain G Hydrophobic interactions: B:I.13 Hydrogen bonds: B:G.9, B:F.10, B:R.12, B:I.13, B:G.14, B:N.35, B:N.36, B:R.80, B:N.318, D:D.16, D:D.16, D:Y.23, E:S.194, G:E.19 NAD.3: 25 residues within 4Å: Chain B: R.189, S.194 Chain E: N.8, G.9, F.10, G.11, R.12, I.13, N.35, N.36, T.37, D.79, R.80, S.98, T.99, G.100, V.101, F.102, T.122, A.123, C.155, L.186, N.318, E.319 Chain G: Y.23 12 PLIP interactions: 9 interactions with chain E, 2 interactions with chain B, 1 interactions with chain D Hydrogen bonds: E:N.8, E:R.12, E:I.13, E:N.35, E:N.36, E:T.37, E:R.80, E:R.80, E:N.318, B:R.189, B:S.194, D:E.19 NAD.4: 24 residues within 4Å: Chain F: G.9, F.10, G.11, R.12, I.13, N.35, N.36, T.37, D.79, R.80, S.98, T.99, G.100, T.122, A.123, C.155, T.185, L.186, N.318, E.319, Y.322 Chain H: D.16, Y.23, D.24 17 PLIP interactions: 15 interactions with chain F, 2 interactions with chain H Hydrophobic interactions: F:I.13, F:N.318, F:Y.322 Hydrogen bonds: F:G.11, F:R.12, F:I.13, F:G.14, F:N.35, F:N.36, F:T.37, F:R.80, F:R.80, F:G.100, F:N.318, F:E.319, H:Y.23, H:D.24

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Matsumura, H. et al., Structure Basis for the Regulation of Glyceraldehyde-3-Phosphate Dehydrogenase Activity via the Intrinsically Disordered Protein CP12. Structure (2011)

Release Date

2012-01-11

Peptides

Glyceraldehyde 3-phosphate dehydrogenase (NADP+): ABEF
CP12: CDGH

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

E
G

F
H

C
C

D
D

G
I

H
J

Glyceraldehyde 3-phosphate dehydrogenase (NADP+)

CP12

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