SMTL ID : 3b2h.1

Iodide derivative of human LFABP at high resolution

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.55 Å

Oligo State

monomer

Ligands

2 x PLM: PALMITIC ACID(Non-covalent)

PLM.1: 18 residues within 4Å: Chain A: S.42, I.44, F.53, I.55, N.64, F.66, L.74, E.75, M.77, L.94, T.96, F.98, S.103, T.105, N.114, M.116, R.125 Ligands: PLM.2 13 PLIP interactions: 13 interactions with chain A Hydrophobic interactions: A:F.53, A:F.53, A:F.53, A:I.55, A:L.94, A:T.96, A:F.98, A:T.105 Hydrogen bonds: A:S.42 Water bridges: A:S.42, A:N.114, A:R.125 Salt bridges: A:R.125 PLM.2: 13 residues within 4Å: Chain A: F.18, M.22, L.31, I.38, I.55, A.57, S.59, K.60, M.77, N.114, M.116, R.125 Ligands: PLM.1 7 PLIP interactions: 7 interactions with chain A Hydrophobic interactions: A:F.18, A:L.31, A:I.38, A:I.55, A:A.57, A:K.60 Salt bridges: A:R.125

12 x IOD: IODIDE ION(Non-functional Binders)

IOD.3: 2 residues within 4Å: Chain A: T.76, M.77 Ligand excluded by PLIP IOD.4: 2 residues within 4Å: Chain A: S.14, Q.15 Ligand excluded by PLIP IOD.5: 3 residues within 4Å: Chain A: E.43, K.52, T.54 Ligand excluded by PLIP IOD.6: 1 residues within 4Å: Chain A: N.100 Ligand excluded by PLIP IOD.7: 1 residues within 4Å: Chain A: T.76 Ligand excluded by PLIP IOD.8: 3 residues within 4Å: Chain A: E.16, K.124, I.126 Ligand excluded by PLIP IOD.9: 3 residues within 4Å: Chain A: V.68, Q.87, L.88 Ligand excluded by PLIP IOD.10: 2 residues within 4Å: Chain A: G.8, T.132 Ligand excluded by PLIP IOD.11: 2 residues within 4Å: Chain A: F.66, T.67 Ligand excluded by PLIP IOD.12: 3 residues within 4Å: Chain A: D.110, K.128, R.129 Ligand excluded by PLIP IOD.13: 2 residues within 4Å: Chain A: Q.11, Q.13 Ligand excluded by PLIP IOD.14: 3 residues within 4Å: Chain A: K.99, I.101, L.118 Ligand excluded by PLIP

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Sharma, A. et al., Utility of anion and cation combinations for phasing of protein structures. J.Struct.Funct.Genom. (2012)

Release Date

2012-06-20

Peptides

Fatty acid-binding protein, liver: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Fatty acid-binding protein, liver

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