SMTL ID : 3b2v.1

Crystal structure of the extracellular region of the epidermal growth factor receptor in complex with the Fab fragment of IMC-11F8

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 3.30 Å

Oligo State

hetero-1-1-1-mer

Ligands

1 x NAG- NAG- BMA: beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose

NAG-NAG-BMA.1: 10 residues within 4Å: Chain C: D.323, S.324, L.325, S.326, I.327, N.328, T.330, N.331, T.358, T.360 2 PLIP interactions: 2 interactions with chain C Hydrogen bonds: C:D.323, C:D.323

2 x NAG- NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG-NAG.2: 1 residues within 4Å: Chain C: N.337 No protein-ligand interaction detected (PLIP) NAG-NAG.3: 4 residues within 4Å: Chain C: E.388, N.389, N.420, N.444 No protein-ligand interaction detected (PLIP)

2 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG.4: 1 residues within 4Å: Chain C: N.389 1 PLIP interactions: 1 interactions with chain C Hydrogen bonds: C:N.389 NAG.5: 1 residues within 4Å: Chain C: N.504 No protein-ligand interaction detected (PLIP)

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Li, S. et al., Structural basis for EGF receptor inhibition by the therapeutic antibody IMC-11F8. Structure (2008)

Release Date

2008-02-19

Peptides

IMC-11F8 FAB Light chain: A
IMC-11F8 FAB Heavy chain: B
Epidermal growth factor receptor: C

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
L

B
H

C
A

IMC-11F8 FAB Light chain

IMC-11F8 FAB Heavy chain

Epidermal growth factor receptor

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