SMTL ID : 3b38.1

Structure of A104V DJ-1

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.85 Å

Oligo State

homo-dimer

Ligands

14 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.1: 4 residues within 4Å: Chain A: R.31, V.180, Q.183, V.184 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:V.180 EDO.2: 5 residues within 4Å: Chain A: N.79, C.109, A.110, H.129, L.131 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:N.79, A:N.79 EDO.3: 8 residues within 4Å: Chain A: L.13, A.14, K.15, G.40, L.41, A.42, V.47, N.84 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:L.13, A:K.15, A:A.42, A:G.43 EDO.4: 3 residues within 4Å: Chain A: N.147, R.148, V.149 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:N.147, A:R.148, A:V.149 EDO.5: 4 residues within 4Å: Chain A: R.30, G.33, I.34, K.35 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:G.33, A:G.33 Water bridges: A:R.30, A:I.34 EDO.6: 5 residues within 4Å: Chain A: A.186, P.187 Chain B: H.129, P.130, L.131 No protein-ligand interaction detected (PLIP) EDO.7: 6 residues within 4Å: Chain A: P.69, Y.70, V.73, I.94, E.97, Q.98 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:Y.70, A:Y.70 EDO.8: 4 residues within 4Å: Chain B: R.31, V.180, Q.183, V.184 1 PLIP interactions: 1 interactions with chain B Hydrogen bonds: B:V.180 EDO.9: 5 residues within 4Å: Chain B: N.79, C.109, A.110, H.129, L.131 2 PLIP interactions: 2 interactions with chain B Hydrogen bonds: B:N.79, B:N.79 EDO.10: 8 residues within 4Å: Chain B: L.13, A.14, K.15, G.40, L.41, A.42, V.47, N.84 4 PLIP interactions: 4 interactions with chain B Hydrogen bonds: B:L.13, B:K.15, B:A.42, B:G.43 EDO.11: 3 residues within 4Å: Chain B: N.147, R.148, V.149 3 PLIP interactions: 3 interactions with chain B Hydrogen bonds: B:N.147, B:R.148, B:V.149 EDO.12: 4 residues within 4Å: Chain B: R.30, G.33, I.34, K.35 4 PLIP interactions: 4 interactions with chain B Hydrogen bonds: B:G.33, B:G.33 Water bridges: B:R.30, B:I.34 EDO.13: 5 residues within 4Å: Chain A: H.129, P.130, L.131 Chain B: A.186, P.187 No protein-ligand interaction detected (PLIP) EDO.14: 6 residues within 4Å: Chain B: P.69, Y.70, V.73, I.94, E.97, Q.98 2 PLIP interactions: 2 interactions with chain B Hydrogen bonds: B:Y.70, B:Y.70

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Lakshminarasimhan, M. et al., Structural Impact of Three Parkinsonism-Associated Missense Mutations on Human DJ-1. Biochemistry (2008)

Release Date

2008-01-15

Peptides

Protein DJ-1: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
A

Protein DJ-1