SMTL ID : 3b3a.1

Structure of E163K/R145E DJ-1

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.50 Å

Oligo State

homo-dimer

Ligands

2 x CL: CHLORIDE ION(Non-functional Binders)

CL.1: 5 residues within 4Å: Chain A: R.51, G.78, N.79 Ligands: EDO.2, EDO.4 Ligand excluded by PLIP CL.5: 5 residues within 4Å: Chain B: R.51, G.78, N.79 Ligands: EDO.6, EDO.8 Ligand excluded by PLIP

6 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.2: 7 residues within 4Å: Chain A: N.79, C.109, A.110, H.129, L.131 Ligands: CL.1, EDO.4 No protein-ligand interaction detected (PLIP) EDO.3: 6 residues within 4Å: Chain A: G.68, P.69, Y.70, V.73, E.97, Q.98 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:Y.70, A:Y.70, A:E.97 EDO.4: 8 residues within 4Å: Chain A: E.18, C.109, H.129, P.161 Chain B: R.31, P.187 Ligands: CL.1, EDO.2 3 PLIP interactions: 2 interactions with chain B, 1 interactions with chain A Hydrogen bonds: B:R.31, B:R.31, A:R.51 EDO.6: 7 residues within 4Å: Chain B: N.79, C.109, A.110, H.129, L.131 Ligands: CL.5, EDO.8 No protein-ligand interaction detected (PLIP) EDO.7: 6 residues within 4Å: Chain B: G.68, P.69, Y.70, V.73, E.97, Q.98 3 PLIP interactions: 3 interactions with chain B Hydrogen bonds: B:Y.70, B:Y.70, B:E.97 EDO.8: 8 residues within 4Å: Chain A: R.31, P.187 Chain B: E.18, C.109, H.129, P.161 Ligands: CL.5, EDO.6 3 PLIP interactions: 2 interactions with chain A, 1 interactions with chain B Hydrogen bonds: A:R.31, A:R.31, B:R.51

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Lakshminarasimhan, M. et al., Structural Impact of Three Parkinsonism-Associated Missense Mutations on Human DJ-1. Biochemistry (2008)

Release Date

2008-01-15

Peptides

Protein DJ-1: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
A

Protein DJ-1