SMTL ID : 3b40.1

Crystal structure of the probable dipeptidase PvdM from Pseudomonas aeruginosa

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.00 Å

Oligo State

monomer

Ligands

2 x CD: CADMIUM ION(Non-covalent)

CD.1: 2 residues within 4Å: Chain A: E.17, E.20 4 PLIP interactions: 4 interactions with chain A Metal complexes: A:E.17, A:E.17, A:E.20, A:E.20 CD.2: 1 residues within 4Å: Chain A: H.353 5 PLIP interactions: 1 interactions with chain A, 4 Ligand-Water interactions Metal complexes: A:H.353, H2O.4, H2O.14, H2O.14, H2O.14

1 x MG: MAGNESIUM ION(Non-covalent)

MG.3: 1 residues within 4Å: Chain A: E.318 2 PLIP interactions: 2 interactions with chain A Metal complexes: A:E.318, A:E.318

2 x CA: CALCIUM ION(Non-covalent)

CA.4: 2 residues within 4Å: Chain A: H.14, D.389 4 PLIP interactions: 3 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:H.14, A:D.389, A:D.389, H2O.14 CA.5: 2 residues within 4Å: Chain A: D.89, H.93 3 PLIP interactions: 3 interactions with chain A Metal complexes: A:D.89, A:D.89, A:H.93

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Bonanno, J.B. et al., Crystal structure of the probable dipeptidase PvdM from Pseudomonas aeruginosa. To be Published

Release Date

2007-11-06

Peptides

Probable dipeptidase: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Probable dipeptidase