SMTL ID : 3b4y.1

FGD1 (Rv0407) from Mycobacterium tuberculosis

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.95 Å

Oligo State

homo-dimer

Ligands

2 x F42: COENZYME F420(Non-covalent)

F42.1: 25 residues within 4Å: Chain A: S.58, D.59, H.60, S.93, V.94, T.96, G.126, T.127, G.128, E.129, N.132, F.145, A.195, A.196, G.197, G.198, P.199, A.200, V.201, I.213, C.214, T.215, E.250, H.280 Ligands: FLC.2 24 PLIP interactions: 24 interactions with chain A Hydrophobic interactions: A:F.145, A:A.195, A:I.213, A:T.215 Hydrogen bonds: A:D.59, A:D.59, A:V.94, A:T.96, A:T.96, A:G.128, A:N.132, A:G.197, A:G.198, A:A.200, A:V.201 Water bridges: A:K.29, A:E.33, A:T.96, A:R.100, A:T.127, A:T.127, A:E.129, A:A.195, A:T.215 F42.3: 25 residues within 4Å: Chain B: S.58, D.59, H.60, S.93, V.94, T.96, G.126, T.127, G.128, E.129, N.132, F.145, A.195, A.196, G.197, G.198, P.199, A.200, V.201, I.213, C.214, T.215, E.250, H.280 Ligands: FLC.4 22 PLIP interactions: 22 interactions with chain B Hydrophobic interactions: B:F.145, B:I.213, B:T.215 Hydrogen bonds: B:D.59, B:D.59, B:V.94, B:T.96, B:T.127, B:G.128, B:G.128, B:N.132, B:G.197, B:G.198, B:A.200, B:V.201 Water bridges: B:T.96, B:R.100, B:T.127, B:T.127, B:E.129, B:R.148, B:T.215

2 x FLC: CITRATE ANION(Non-covalent)

FLC.2: 10 residues within 4Å: Chain A: W.64, E.129, T.215, K.218, K.252, L.272, K.279, H.280, R.303 Ligands: F42.1 13 PLIP interactions: 13 interactions with chain A Hydrophobic interactions: A:W.64 Hydrogen bonds: A:T.215, A:T.215, A:K.279 Water bridges: A:T.215, A:K.252 Salt bridges: A:K.218, A:K.252, A:K.279, A:K.279, A:H.280, A:R.303, A:R.303 FLC.4: 10 residues within 4Å: Chain B: W.64, E.129, T.215, K.218, K.252, L.272, K.279, H.280, R.303 Ligands: F42.3 13 PLIP interactions: 13 interactions with chain B Hydrophobic interactions: B:W.64 Hydrogen bonds: B:K.279 Water bridges: B:K.252, B:K.252, B:K.279, B:K.279 Salt bridges: B:K.218, B:K.252, B:K.279, B:K.279, B:H.280, B:R.303, B:R.303

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Bashiri, G. et al., Crystal structures of F420-dependent glucose-6-phosphate dehydrogenase FGD1 involved in the activation of the anti-tuberculosis drug candidate PA-824 reveal the basis of coenzyme and substrate binding. J.Biol.Chem. (2008)

Release Date

2008-04-22

Peptides

PROBABLE F420-DEPENDENT GLUCOSE-6-PHOSPHATE DEHYDROGENASE FGD1: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

PROBABLE F420-DEPENDENT GLUCOSE-6-PHOSPHATE DEHYDROGENASE FGD1

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