SMTL ID : 3b52.1

Ni,Fe-CODH-600 mV state + CO2

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.50 Å

Oligo State

homo-dimer

Ligands

2 x FE2: FE (II) ION(Non-covalent)

FE2.1: 5 residues within 4Å: Chain A: H.281, C.315, C.546 Ligands: WCC.4, CO2.5 2 PLIP interactions: 2 interactions with chain A Metal complexes: A:C.315, A:C.546 FE2.6: 5 residues within 4Å: Chain B: H.281, C.315, C.546 Ligands: WCC.9, CO2.10 2 PLIP interactions: 2 interactions with chain B Metal complexes: B:C.315, B:C.546

2 x SF4: IRON/SULFUR CLUSTER(Non-covalent)

SF4.2: 12 residues within 4Å: Chain A: C.68, H.70, C.71, Q.73, G.74, C.76, G.88, I.89, C.90, A.92, R.100, M.219 4 PLIP interactions: 4 interactions with chain A, Metal complexes: A:C.68, A:C.71, A:C.76, A:C.90 SF4.7: 12 residues within 4Å: Chain B: C.68, H.70, C.71, Q.73, G.74, C.76, G.88, I.89, C.90, A.92, R.100, M.219 4 PLIP interactions: 4 interactions with chain B, Metal complexes: B:C.68, B:C.71, B:C.76, B:C.90

2 x FES: FE2/S2 (INORGANIC) CLUSTER(Non-covalent)

FES.3: 8 residues within 4Å: Chain A: C.59, F.61, G.62, C.67 Chain B: C.59, C.67, R.69 Ligands: FES.8 2 PLIP interactions: 2 interactions with chain A, Metal complexes: A:C.59, A:C.67 FES.8: 8 residues within 4Å: Chain A: C.59, C.67, R.69 Chain B: C.59, F.61, G.62, C.67 Ligands: FES.3 2 PLIP interactions: 2 interactions with chain B, Metal complexes: B:C.59, B:C.67

2 x WCC: FE(3)-NI(1)-S(4) CLUSTER(Non-covalent)

WCC.4: 14 residues within 4Å: Chain A: H.281, C.314, C.315, S.332, C.353, G.465, C.466, C.496, C.546, M.580, H.581, K.583 Ligands: FE2.1, CO2.5 5 PLIP interactions: 4 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:C.353, A:C.466, A:C.496, A:C.546, H2O.34 WCC.9: 14 residues within 4Å: Chain B: H.281, C.314, C.315, S.332, C.353, G.465, C.466, C.496, C.546, M.580, H.581, K.583 Ligands: FE2.6, CO2.10 5 PLIP interactions: 4 interactions with chain B, 1 Ligand-Water interactions Metal complexes: B:C.353, B:C.466, B:C.496, B:C.546, H2O.68

2 x CO2: CARBON DIOXIDE(Non-covalent)

CO2.5: 8 residues within 4Å: Chain A: H.113, H.281, C.315, C.546, K.583, I.587 Ligands: FE2.1, WCC.4 1 PLIP interactions: 1 interactions with chain A Water bridges: A:V.547 CO2.10: 8 residues within 4Å: Chain B: H.113, H.281, C.315, C.546, K.583, I.587 Ligands: FE2.6, WCC.9 1 PLIP interactions: 1 interactions with chain B Water bridges: B:V.547

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Jeoung, J.H. et al., Carbon dioxide activation at the Ni,Fe-cluster of anaerobic carbon monoxide dehydrogenase. Science (2007)

Release Date

2007-12-11

Peptides

Carbon monoxide dehydrogenase 2: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
X

B
X

Carbon monoxide dehydrogenase 2

Related Entries With Identical Sequence