SMTL ID : 3b5q.1 (1 other biounit)

Crystal structure of a putative sulfatase (NP_810509.1) from Bacteroides thetaiotaomicron VPI-5482 at 2.40 A resolution

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.40 Å

Oligo State

monomer

Ligands

1 x ZN: ZINC ION(Non-covalent)

ZN.1: 4 residues within 4Å: Chain A: C.226, C.227, H.463, H.470 4 PLIP interactions: 4 interactions with chain A Metal complexes: A:C.226, A:C.227, A:H.463, A:H.470

1 x CL: CHLORIDE ION(Non-functional Binders)

CL.2: 6 residues within 4Å: Chain A: S.378, E.379, Y.380, E.381, Y.382, V.383 Ligand excluded by PLIP

14 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.3: 4 residues within 4Å: Chain A: F.138, T.139, V.145, F.150 1 PLIP interactions: 1 interactions with chain A Water bridges: A:D.140 EDO.4: 8 residues within 4Å: Chain A: L.327, L.328, T.329, D.334, I.354, L.356, S.368, H.369 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:L.328, A:D.334, A:H.369 Water bridges: A:L.328, A:S.368 EDO.5: 7 residues within 4Å: Chain A: G.40, C.41, T.42, L.43, P.44, K.255, K.259 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:C.41, A:L.43 EDO.6: 3 residues within 4Å: Chain A: K.413, Y.427 Ligands: EDO.14 No protein-ligand interaction detected (PLIP) EDO.7: 1 residues within 4Å: Chain A: L.151 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:N.147 EDO.8: 8 residues within 4Å: Chain A: V.212, E.213, D.214, N.217, I.218, R.418, K.419, N.420 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:E.213, A:D.214, A:D.214, A:N.217, A:N.420 EDO.9: 6 residues within 4Å: Chain A: R.30, V.31, T.38, I.247, Q.251, M.289 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:T.38, A:Q.251 Water bridges: A:R.30, A:R.30 EDO.10: 4 residues within 4Å: Chain A: E.89, P.90, N.92, T.93 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:P.90 EDO.11: 3 residues within 4Å: Chain A: R.275, G.314, P.315 4 PLIP interactions: 4 interactions with chain A Water bridges: A:Y.269, A:Y.269, A:G.274, A:T.277 EDO.12: 6 residues within 4Å: Chain A: I.218, P.219, G.405, E.406, N.420, K.423 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:I.218, A:E.406, A:N.420 EDO.13: 6 residues within 4Å: Chain A: D.140, P.141, E.142, F.143, P.144, R.197 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:P.141 EDO.14: 3 residues within 4Å: Chain A: K.426, Y.427 Ligands: EDO.6 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:Y.427 EDO.15: 4 residues within 4Å: Chain A: Q.29, R.30, Y.35, Q.37 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:Q.37 Water bridges: A:Q.29, A:Q.29, A:R.30 EDO.16: 4 residues within 4Å: Chain A: H.252, K.255, M.256, K.259 No protein-ligand interaction detected (PLIP)

1 x PEG: DI(HYDROXYETHYL)ETHER(Non-functional Binders)

PEG.17: 7 residues within 4Å: Chain A: K.16, S.109, G.110, Y.111, P.170, A.343, G.344 No protein-ligand interaction detected (PLIP)

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Joint Center for Structural Genomics (JCSG), Crystal structure of a putative sulfatase (NP_810509.1) from Bacteroides thetaiotaomicron VPI-5482 at 2.40 A resolution. To be published

Release Date

2007-11-13

Peptides

Putative sulfatase yidJ: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Putative sulfatase yidJ

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