- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.05 Å
- Oligo State
- homo-tetramer
- Ligands
- 4 x FMN: FLAVIN MONONUCLEOTIDE(Non-covalent)
- 4 x NAD: NICOTINAMIDE-ADENINE-DINUCLEOTIDE(Non-covalent)
NAD.2: 14 residues within 4Å:- Chain A: Y.12, H.14, M.43, A.51, Q.86, G.168, D.169, G.170
- Chain D: T.89, D.92, Q.93, G.95
- Ligands: FMN.1, 15P.3
17 PLIP interactions:12 interactions with chain A, 5 interactions with chain D- Hydrogen bonds: A:Y.12, A:T.42, A:T.42, A:A.51, D:D.92, D:Q.93, D:Q.93
- Water bridges: A:Y.12, A:R.79, A:G.85, A:Q.86, A:Q.86, A:G.170, A:G.170, D:G.95, D:G.96
- pi-Stacking: A:Y.12
NAD.7: 13 residues within 4Å:- Chain B: Y.12, M.43, A.51, Q.86, G.168, D.169, G.170
- Chain C: T.89, D.92, Q.93, G.95
- Ligands: FMN.6, 15P.9
16 PLIP interactions:9 interactions with chain B, 7 interactions with chain C- Hydrophobic interactions: B:Y.12
- Hydrogen bonds: B:A.51, C:D.92, C:Q.93
- Water bridges: B:T.42, B:R.79, B:G.85, B:Q.86, B:G.170, B:G.170, C:D.92, C:Q.93, C:Q.93, C:G.96, C:G.96
- pi-Stacking: B:Y.12
NAD.13: 14 residues within 4Å:- Chain B: T.89, D.92, Q.93, G.95
- Chain C: Y.12, H.14, M.43, A.51, Q.86, G.168, D.169, G.170
- Ligands: FMN.12, 15P.14
15 PLIP interactions:4 interactions with chain B, 11 interactions with chain C- Hydrogen bonds: B:Q.93, B:Q.93, C:T.42, C:T.42, C:A.51
- Water bridges: B:G.95, B:G.96, C:Y.12, C:R.79, C:Q.86, C:Q.86, C:Q.86, C:G.170, C:G.170
- pi-Stacking: C:Y.12
NAD.18: 13 residues within 4Å:- Chain A: T.89, D.92, Q.93, G.95
- Chain D: Y.12, M.43, A.51, Q.86, G.168, D.169, G.170
- Ligands: FMN.17, 15P.20
18 PLIP interactions:8 interactions with chain A, 10 interactions with chain D- Hydrogen bonds: A:D.92, A:D.92, A:Q.93, D:Y.12, D:A.51
- Water bridges: A:D.92, A:Q.93, A:Q.93, A:G.96, A:G.96, D:T.42, D:R.79, D:G.85, D:Q.86, D:G.170, D:G.170
- Hydrophobic interactions: D:Y.12
- pi-Stacking: D:Y.12
- 12 x 15P: POLYETHYLENE GLYCOL (N=34)(Non-functional Binders)
15P.3: 8 residues within 4Å:- Chain A: F.80
- Chain C: Y.143
- Chain D: G.95, W.98, A.99, H.133
- Ligands: FMN.1, NAD.2
2 PLIP interactions:1 interactions with chain C, 1 interactions with chain D- Hydrogen bonds: C:Y.143, D:H.133
15P.4: 9 residues within 4Å:- Chain A: W.98, A.99, S.100, G.101, Y.104
- Chain B: Y.143, A.144, Q.146, F.149
2 PLIP interactions:1 interactions with chain B, 1 interactions with chain A- Hydrogen bonds: B:Q.146
- Water bridges: A:G.101
15P.5: 5 residues within 4Å:- Chain A: Y.188, G.191, K.195
- Chain B: L.196, N.197
4 PLIP interactions:3 interactions with chain A, 1 interactions with chain B- Hydrogen bonds: A:K.195
- Water bridges: A:G.191, A:G.191, B:N.197
15P.9: 7 residues within 4Å:- Chain B: F.80
- Chain C: G.95, W.98, H.133
- Chain D: Y.143
- Ligands: FMN.6, NAD.7
2 PLIP interactions:1 interactions with chain D, 1 interactions with chain C- Hydrogen bonds: D:Y.143, C:H.133
15P.10: 9 residues within 4Å:- Chain A: Y.143, A.144, Q.146, F.149
- Chain B: W.98, A.99, S.100, G.101, Y.104
3 PLIP interactions:2 interactions with chain B, 1 interactions with chain A- Hydrogen bonds: B:A.99, A:Q.146
- Water bridges: B:G.101
15P.11: 6 residues within 4Å:- Chain A: G.105, L.196, N.197
- Chain B: Y.188, L.192, K.195
2 PLIP interactions:1 interactions with chain A, 1 interactions with chain B- Water bridges: A:N.197
- Hydrogen bonds: B:K.195
15P.14: 8 residues within 4Å:- Chain A: Y.143
- Chain B: G.95, W.98, A.99, H.133
- Chain C: F.80
- Ligands: FMN.12, NAD.13
2 PLIP interactions:1 interactions with chain A, 1 interactions with chain B- Hydrogen bonds: A:Y.143, B:H.133
15P.15: 9 residues within 4Å:- Chain C: W.98, A.99, S.100, G.101, Y.104
- Chain D: Y.143, A.144, Q.146, F.149
2 PLIP interactions:1 interactions with chain C, 1 interactions with chain D- Water bridges: C:G.101
- Hydrogen bonds: D:Q.146
15P.16: 5 residues within 4Å:- Chain C: Y.188, G.191, K.195
- Chain D: L.196, N.197
4 PLIP interactions:3 interactions with chain C, 1 interactions with chain D- Hydrogen bonds: C:K.195
- Water bridges: C:G.191, C:G.191, D:N.197
15P.20: 7 residues within 4Å:- Chain A: G.95, W.98, H.133
- Chain B: Y.143
- Chain D: F.80
- Ligands: FMN.17, NAD.18
2 PLIP interactions:1 interactions with chain B, 1 interactions with chain A- Hydrogen bonds: B:Y.143, A:H.133
15P.21: 9 residues within 4Å:- Chain C: Y.143, A.144, Q.146, F.149
- Chain D: W.98, A.99, S.100, G.101, Y.104
3 PLIP interactions:2 interactions with chain D, 1 interactions with chain C- Hydrogen bonds: D:A.99, C:Q.146
- Water bridges: D:G.101
15P.22: 6 residues within 4Å:- Chain C: G.105, L.196, N.197
- Chain D: Y.188, L.192, K.195
2 PLIP interactions:1 interactions with chain D, 1 interactions with chain C- Hydrogen bonds: D:K.195
- Water bridges: C:N.197
- 2 x AMP: ADENOSINE MONOPHOSPHATE(Non-covalent)
AMP.8: 7 residues within 4Å:- Chain B: A.144, A.145, Q.146, E.147, S.180, Y.184, E.187
4 PLIP interactions:4 interactions with chain B- Hydrogen bonds: B:Q.146, B:S.180
- Water bridges: B:E.187, B:E.187
AMP.19: 7 residues within 4Å:- Chain D: A.144, A.145, Q.146, E.147, S.180, Y.184, E.187
2 PLIP interactions:2 interactions with chain D- Hydrogen bonds: D:Q.146, D:S.180
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Andrade, S.L. et al., Crystal structure of the NADH:quinone oxidoreductase WrbA from Escherichia coli. J.Bacteriol. (2007)
- Release Date
- 2007-12-11
- Peptides
- Flavoprotein wrbA: ABCD
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
BC
AD
B
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.05 Å
- Oligo State
- homo-tetramer
- Ligands
- 4 x FMN: FLAVIN MONONUCLEOTIDE(Non-covalent)
- 4 x NAD: NICOTINAMIDE-ADENINE-DINUCLEOTIDE(Non-covalent)
- 12 x 15P: POLYETHYLENE GLYCOL (N=34)(Non-functional Binders)
- 2 x AMP: ADENOSINE MONOPHOSPHATE(Non-covalent)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Andrade, S.L. et al., Crystal structure of the NADH:quinone oxidoreductase WrbA from Escherichia coli. J.Bacteriol. (2007)
- Release Date
- 2007-12-11
- Peptides
- Flavoprotein wrbA: ABCD
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
BC
AD
B