SMTL ID : 3b7c.1

CRYSTAL STRUCTURE OF A NTF-2 LIKE PROTEIN OF UNKNOWN FUNCTION (SO_0125) FROM SHEWANELLA ONEIDENSIS MR-1 AT 1.70 A RESOLUTION

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.70 Å

Oligo State

homo-dimer

Ligands

2 x CL: CHLORIDE ION(Non-functional Binders)

CL.1: 3 residues within 4Å: Chain A: S.79, N.80, Y.81 Ligand excluded by PLIP CL.8: 3 residues within 4Å: Chain B: S.79, N.80, Y.81 Ligand excluded by PLIP

12 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.2: 7 residues within 4Å: Chain A: V.8, L.11, K.12, E.15, K.69, F.70, I.72 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:K.69, A:F.70 EDO.3: 5 residues within 4Å: Chain A: G.21, L.23, Y.59, P.60, K.62 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:G.21, A:L.23, A:Y.59 EDO.4: 4 residues within 4Å: Chain A: M.77, L.78, S.79, N.80 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:S.79 Water bridges: A:N.80 EDO.5: 6 residues within 4Å: Chain A: E.67, L.68, K.69, D.90, L.91, K.92 No protein-ligand interaction detected (PLIP) EDO.6: 4 residues within 4Å: Chain A: W.89, P.98, T.99, D.122 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:T.99, A:D.122 Water bridges: A:T.97 EDO.7: 9 residues within 4Å: Chain A: L.11, Q.14, Y.26, Y.30, F.70, L.104, I.115, D.118, S.120 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:Q.14, A:Q.14, A:S.120, A:S.120 EDO.9: 7 residues within 4Å: Chain B: V.8, L.11, K.12, E.15, K.69, F.70, I.72 2 PLIP interactions: 2 interactions with chain B Hydrogen bonds: B:K.69, B:F.70 EDO.10: 5 residues within 4Å: Chain B: G.21, L.23, Y.59, P.60, K.62 3 PLIP interactions: 3 interactions with chain B Hydrogen bonds: B:G.21, B:L.23, B:Y.59 EDO.11: 4 residues within 4Å: Chain B: M.77, L.78, S.79, N.80 2 PLIP interactions: 2 interactions with chain B Hydrogen bonds: B:S.79 Water bridges: B:N.80 EDO.12: 6 residues within 4Å: Chain B: E.67, L.68, K.69, D.90, L.91, K.92 1 PLIP interactions: 1 interactions with chain B Water bridges: B:D.90 EDO.13: 4 residues within 4Å: Chain B: W.89, P.98, T.99, D.122 3 PLIP interactions: 3 interactions with chain B Hydrogen bonds: B:T.99, B:D.122 Water bridges: B:T.97 EDO.14: 9 residues within 4Å: Chain B: L.11, Q.14, Y.26, Y.30, F.70, L.104, I.115, D.118, S.120 4 PLIP interactions: 4 interactions with chain B Hydrogen bonds: B:Q.14, B:Q.14, B:S.120, B:S.120

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Joint Center for Structural Genomics (JCSG), Crystal structure of NTF-2 like protein of unknown function (NP_715767.1) from Shewanella oneidensis at 1.70 A resolution. To be published

Release Date

2007-11-13

Peptides

Uncharacterized protein: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
A

Uncharacterized protein