- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 1.45 Å
- Oligo State
- homo-tetramer
- Ligands
- 2 x NAG- FUC: alpha-L-fucopyranose-(1-3)-2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)
- 2 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)
- 10 x CA: CALCIUM ION(Non-covalent)(Non-functional Binders)
CA.3: 4 residues within 4Å:- Chain A: D.294, N.296, D.302, S.304
5 PLIP interactions:3 interactions with chain A, 2 Ligand-Water interactions- Metal complexes: A:D.294, A:D.294, A:D.302, H2O.3, H2O.3
CA.4: 5 residues within 4Å:- Chain A: D.212, G.216, D.242, G.260, N.262
6 PLIP interactions:5 interactions with chain A, 1 Ligand-Water interactions- Metal complexes: A:D.212, A:G.216, A:D.242, A:G.260, A:N.262, H2O.2
CA.5: 1 residues within 4Å:- Ligands: CA.23
No protein-ligand interaction detected (PLIP)CA.11: 4 residues within 4Å:- Chain B: D.294, N.296, D.302, S.304
5 PLIP interactions:3 interactions with chain B, 2 Ligand-Water interactions- Metal complexes: B:D.294, B:D.294, B:D.302, H2O.21, H2O.21
CA.12: 5 residues within 4Å:- Chain B: D.212, G.216, D.242, G.260, N.262
6 PLIP interactions:5 interactions with chain B, 1 Ligand-Water interactions- Metal complexes: B:D.212, B:G.216, B:D.242, B:G.260, B:N.262, H2O.20
CA.21: 4 residues within 4Å:- Chain C: D.294, N.296, D.302, S.304
5 PLIP interactions:3 interactions with chain C, 2 Ligand-Water interactions- Metal complexes: C:D.294, C:D.294, C:D.302, H2O.39, H2O.39
CA.22: 5 residues within 4Å:- Chain C: D.212, G.216, D.242, G.260, N.262
6 PLIP interactions:5 interactions with chain C, 1 Ligand-Water interactions- Metal complexes: C:D.212, C:G.216, C:D.242, C:G.260, C:N.262, H2O.38
CA.23: 1 residues within 4Å:- Ligands: CA.5
No protein-ligand interaction detected (PLIP)CA.29: 4 residues within 4Å:- Chain D: D.294, N.296, D.302, S.304
5 PLIP interactions:3 interactions with chain D, 2 Ligand-Water interactions- Metal complexes: D:D.294, D:D.294, D:D.302, H2O.57, H2O.58
CA.30: 5 residues within 4Å:- Chain D: D.212, G.216, D.242, G.260, N.262
6 PLIP interactions:5 interactions with chain D, 1 Ligand-Water interactions- Metal complexes: D:D.212, D:G.216, D:D.242, D:G.260, D:N.262, H2O.56
- 4 x ZMR: ZANAMIVIR(Non-covalent)
ZMR.6: 16 residues within 4Å:- Chain A: R.36, E.37, D.69, R.70, R.74, W.97, I.141, R.143, E.146, S.165, E.195, E.196, R.211, N.213, R.286, Y.320
25 PLIP interactions:25 interactions with chain A- Hydrophobic interactions: A:W.97, A:I.141, A:R.143
- Hydrogen bonds: A:R.70, A:W.97, A:W.97, A:R.143, A:E.196, A:R.211, A:R.211, A:Y.320
- Water bridges: A:R.36, A:R.36, A:D.69, A:R.74, A:R.143, A:E.146, A:E.196, A:E.196
- Salt bridges: A:R.36, A:E.37, A:D.69, A:E.146, A:R.211, A:R.286
ZMR.13: 16 residues within 4Å:- Chain B: R.36, E.37, D.69, R.70, R.74, W.97, I.141, R.143, E.146, S.165, E.195, E.196, R.211, N.213, R.286, Y.320
24 PLIP interactions:24 interactions with chain B- Hydrophobic interactions: B:W.97, B:I.141, B:R.143
- Hydrogen bonds: B:R.70, B:W.97, B:W.97, B:R.143, B:E.196, B:R.211, B:R.211
- Water bridges: B:R.36, B:R.36, B:D.69, B:R.74, B:R.143, B:E.146, B:E.196, B:E.196
- Salt bridges: B:R.36, B:E.37, B:D.69, B:E.146, B:R.211, B:R.286
ZMR.24: 16 residues within 4Å:- Chain C: R.36, E.37, D.69, R.70, R.74, W.97, I.141, R.143, E.146, S.165, E.195, E.196, R.211, N.213, R.286, Y.320
23 PLIP interactions:23 interactions with chain C- Hydrophobic interactions: C:W.97, C:I.141, C:R.143
- Hydrogen bonds: C:R.70, C:W.97, C:W.97, C:R.143, C:E.196, C:R.211, C:R.211
- Water bridges: C:R.36, C:R.36, C:D.69, C:R.74, C:R.143, C:E.196, C:E.196
- Salt bridges: C:R.36, C:E.37, C:D.69, C:E.146, C:R.211, C:R.286
ZMR.31: 16 residues within 4Å:- Chain D: R.36, E.37, D.69, R.70, R.74, W.97, I.141, R.143, E.146, S.165, E.195, E.196, R.211, N.213, R.286, Y.320
24 PLIP interactions:24 interactions with chain D- Hydrophobic interactions: D:W.97, D:I.141, D:R.143
- Hydrogen bonds: D:R.70, D:W.97, D:W.97, D:R.143, D:E.196, D:R.211, D:R.211, D:Y.320
- Water bridges: D:R.36, D:D.69, D:R.74, D:R.143, D:E.196, D:E.196, D:E.196
- Salt bridges: D:R.36, D:E.37, D:D.69, D:E.146, D:R.211, D:R.286
- 18 x GOL: GLYCEROL(Non-functional Binders)
GOL.7: 5 residues within 4Å:- Chain A: P.11, I.12, Y.271, W.276, W.293
Ligand excluded by PLIPGOL.8: 5 residues within 4Å:- Chain A: S.13, G.14, S.368, D.369, T.370
Ligand excluded by PLIPGOL.9: 5 residues within 4Å:- Chain A: F.240, P.246, G.249, T.250, V.256
Ligand excluded by PLIPGOL.10: 7 residues within 4Å:- Chain A: P.80, E.83, N.89
- Chain D: Y.88, N.89, S.90, R.91
Ligand excluded by PLIPGOL.14: 5 residues within 4Å:- Chain B: P.11, I.12, Y.271, W.276, W.293
Ligand excluded by PLIPGOL.15: 5 residues within 4Å:- Chain B: S.13, G.14, S.368, D.369, T.370
Ligand excluded by PLIPGOL.16: 7 residues within 4Å:- Chain A: P.87, Y.88, N.89, S.90
- Chain B: P.80, E.83, N.89
Ligand excluded by PLIPGOL.17: 7 residues within 4Å:- Chain B: H.62, N.64, G.65, T.66, K.68, S.71
- Chain C: R.25
Ligand excluded by PLIPGOL.18: 6 residues within 4Å:- Chain B: I.134, W.137, K.172, L.174, V.181, S.184
Ligand excluded by PLIPGOL.25: 5 residues within 4Å:- Chain C: P.11, I.12, Y.271, W.276, W.293
Ligand excluded by PLIPGOL.26: 5 residues within 4Å:- Chain C: S.13, G.14, S.368, D.369, T.370
Ligand excluded by PLIPGOL.27: 5 residues within 4Å:- Chain C: F.240, P.246, G.249, T.250, V.256
Ligand excluded by PLIPGOL.28: 7 residues within 4Å:- Chain B: Y.88, N.89, S.90, R.91
- Chain C: P.80, E.83, N.89
Ligand excluded by PLIPGOL.32: 5 residues within 4Å:- Chain D: P.11, I.12, Y.271, W.276, W.293
Ligand excluded by PLIPGOL.33: 5 residues within 4Å:- Chain D: S.13, G.14, S.368, D.369, T.370
Ligand excluded by PLIPGOL.34: 7 residues within 4Å:- Chain C: P.87, Y.88, N.89, S.90
- Chain D: P.80, E.83, N.89
Ligand excluded by PLIPGOL.35: 7 residues within 4Å:- Chain A: R.25
- Chain D: H.62, N.64, G.65, T.66, K.68, S.71
Ligand excluded by PLIPGOL.36: 6 residues within 4Å:- Chain D: I.134, W.137, K.172, L.174, V.181, S.184
Ligand excluded by PLIP- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Xu, X. et al., Structural characterization of the 1918 influenza virus H1N1 neuraminidase. J.Virol. (2008)
- Release Date
- 2008-10-07
- Peptides
- Neuraminidase: ABCD
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
BC
AD
B
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 1.45 Å
- Oligo State
- homo-tetramer
- Ligands
- 2 x NAG- FUC: alpha-L-fucopyranose-(1-3)-2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)
- 2 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)
- 10 x CA: CALCIUM ION(Non-covalent)(Non-functional Binders)
- 4 x ZMR: ZANAMIVIR(Non-covalent)
- 18 x GOL: GLYCEROL(Non-functional Binders)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Xu, X. et al., Structural characterization of the 1918 influenza virus H1N1 neuraminidase. J.Virol. (2008)
- Release Date
- 2008-10-07
- Peptides
- Neuraminidase: ABCD
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
BC
AD
B