SMTL ID : 3b7w.1

Crystal structure of human acyl-CoA synthetase medium-chain family member 2A, with L64P mutation

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.00 Å

Oligo State

homo-trimer

Ligands

3 x MG: MAGNESIUM ION(Non-covalent)

MG.1: 4 residues within 4Å: Chain A: M.476, H.478, P.479, V.481 5 PLIP interactions: 2 interactions with chain A, 3 Ligand-Water interactions Metal complexes: A:H.478, A:V.481, H2O.15, H2O.16, H2O.16 MG.7: 4 residues within 4Å: Chain B: M.476, H.478, P.479, V.481 5 PLIP interactions: 2 interactions with chain B, 3 Ligand-Water interactions Metal complexes: B:H.478, B:V.481, H2O.33, H2O.33, H2O.33 MG.13: 4 residues within 4Å: Chain C: M.476, H.478, P.479, V.481 5 PLIP interactions: 2 interactions with chain C, 3 Ligand-Water interactions Metal complexes: C:H.478, C:V.481, H2O.51, H2O.51, H2O.51

12 x CL: CHLORIDE ION(Non-functional Binders)

CL.2: 1 residues within 4Å: Chain A: R.465 Ligand excluded by PLIP CL.3: 2 residues within 4Å: Chain A: T.338, N.341 Ligand excluded by PLIP CL.4: 3 residues within 4Å: Chain A: A.344, Q.345, T.346 Ligand excluded by PLIP CL.5: 3 residues within 4Å: Chain A: R.406 Chain C: S.294, S.295 Ligand excluded by PLIP CL.8: 1 residues within 4Å: Chain B: R.465 Ligand excluded by PLIP CL.9: 2 residues within 4Å: Chain B: T.338, N.341 Ligand excluded by PLIP CL.10: 3 residues within 4Å: Chain B: A.344, Q.345, T.346 Ligand excluded by PLIP CL.11: 1 residues within 4Å: Chain B: R.406 Ligand excluded by PLIP CL.14: 1 residues within 4Å: Chain C: R.465 Ligand excluded by PLIP CL.15: 2 residues within 4Å: Chain C: T.338, N.341 Ligand excluded by PLIP CL.16: 3 residues within 4Å: Chain C: A.344, Q.345, T.346 Ligand excluded by PLIP CL.17: 1 residues within 4Å: Chain C: R.406 Ligand excluded by PLIP

3 x GOL: GLYCEROL(Non-functional Binders)

GOL.6: 5 residues within 4Å: Chain A: S.294, S.295, Y.296, P.297, H.323 2 PLIP interactions: 2 interactions with chain A Water bridges: A:S.294, A:S.294 GOL.12: 5 residues within 4Å: Chain B: S.294, S.295, Y.296, P.297, H.323 2 PLIP interactions: 2 interactions with chain B Water bridges: B:S.294, B:S.294 GOL.18: 11 residues within 4Å: Chain A: G.392, N.393, V.394, R.406, D.433, F.434 Chain C: S.294, S.295, Y.296, P.297, H.323 8 PLIP interactions: 5 interactions with chain A, 3 interactions with chain C Hydrogen bonds: A:G.392, A:N.393, A:V.394, A:R.406, A:R.406 Water bridges: C:S.294, C:S.294, C:H.323

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Kochan, G. et al., Structural snapshots for the conformation-dependent catalysis by human medium-chain acyl-coenzyme A synthetase ACSM2A. J.Mol.Biol. (2009)

Release Date

2007-11-27

Peptides

Acyl-coenzyme A synthetase ACSM2A, mitochondrial precursor: ABC

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
A

C
A

Acyl-coenzyme A synthetase ACSM2A, mitochondrial precursor

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