SMTL ID : 3b96.1

Structural Basis for Substrate Fatty-Acyl Chain Specificity: Crystal Structure of Human Very-Long-Chain Acyl-CoA Dehydrogenase

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.91 Å

Oligo State

homo-dimer

Ligands

2 x MYA: TETRADECANOYL-COA(Non-covalent)

MYA.1: 18 residues within 4Å: Chain A: Y.92, V.96, G.107, G.111, A.112, S.115, I.116, F.146, L.148, T.149, G.154, S.155, L.269, A.279, F.393, E.394, G.395 Ligands: FAD.2 5 PLIP interactions: 5 interactions with chain A Hydrophobic interactions: A:V.96, A:A.279, A:F.393 Hydrogen bonds: A:G.154, A:E.394 MYA.3: 18 residues within 4Å: Chain B: Y.92, V.96, G.107, G.111, A.112, S.115, I.116, F.146, L.148, T.149, G.154, S.155, L.269, A.279, F.393, E.394, G.395 Ligands: FAD.4 5 PLIP interactions: 5 interactions with chain B Hydrophobic interactions: B:V.96, B:A.279, B:F.393 Hydrogen bonds: B:G.154, B:E.394

2 x FAD: FLAVIN-ADENINE DINUCLEOTIDE(Non-covalent)

FAD.2: 31 residues within 4Å: Chain A: F.146, L.148, T.149, G.154, S.155, W.181, I.182, S.183, K.231, T.239, I.389, I.392, F.393, E.394, T.396, D.398, I.399, L.402, Q.494 Chain B: R.298, Q.300, F.301, I.305, F.308, L.310, I.311, Q.367, I.368, G.370, G.371 Ligands: MYA.1 24 PLIP interactions: 18 interactions with chain A, 6 interactions with chain B Hydrophobic interactions: A:W.181, A:K.231, A:I.389 Hydrogen bonds: A:F.146, A:L.148, A:T.149, A:T.149, A:S.155, A:S.155, A:S.183, A:E.394, A:T.396, A:D.398, A:Q.494, B:Q.367, B:G.371 Water bridges: A:F.146, A:S.153, A:T.396, B:R.298, B:M.372 pi-Stacking: A:F.393 Salt bridges: B:R.298, B:R.298 FAD.4: 31 residues within 4Å: Chain A: R.298, Q.300, F.301, I.305, F.308, L.310, I.311, Q.367, I.368, G.370, G.371 Chain B: F.146, L.148, T.149, G.154, S.155, W.181, I.182, S.183, K.231, T.239, I.389, I.392, F.393, E.394, T.396, D.398, I.399, L.402, Q.494 Ligands: MYA.3 24 PLIP interactions: 18 interactions with chain B, 6 interactions with chain A Hydrophobic interactions: B:W.181, B:K.231, B:I.389 Hydrogen bonds: B:F.146, B:L.148, B:T.149, B:T.149, B:S.155, B:S.155, B:S.183, B:E.394, B:T.396, B:T.396, B:Q.494, A:Q.367, A:G.371 Water bridges: B:F.146, B:S.153, B:T.396, A:R.298, A:M.372 pi-Stacking: B:F.393 Salt bridges: A:R.298, A:R.298

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

McAndrew, R.P. et al., Structural basis for substrate fatty acyl chain specificity: crystal structure of human very-long-chain acyl-CoA dehydrogenase. J.Biol.Chem. (2008)

Release Date

2008-02-12

Peptides

Very long-chain specific acyl-CoA dehydrogenase: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
A

Very long-chain specific acyl-CoA dehydrogenase