SMTL ID : 3b9w.1

The 1.3 A resolution structure of Nitrosomonas europaea Rh50 and mechanistic implications for NH3 transport by Rhesus family proteins

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.30 Å

Oligo State

homo-trimer

Ligands

3 x BOG: octyl beta-D-glucopyranoside(Non-covalent)

BOG.1: 9 residues within 4Å: Chain A: P.58, I.61, L.62, A.65, N.66, P.75 Chain C: L.213, P.259, F.263 9 PLIP interactions: 6 interactions with chain A, 3 interactions with chain C Hydrophobic interactions: A:P.58, A:I.61, A:A.65, A:P.75, C:L.213, C:P.259, C:F.263 Water bridges: A:N.66, A:N.66 BOG.3: 9 residues within 4Å: Chain A: L.213, P.259, F.263 Chain B: P.58, I.61, L.62, A.65, N.66, P.75 9 PLIP interactions: 6 interactions with chain B, 3 interactions with chain A Hydrophobic interactions: B:P.58, B:I.61, B:A.65, B:P.75, A:L.213, A:P.259, A:F.263 Water bridges: B:N.66, B:N.66 BOG.5: 9 residues within 4Å: Chain B: L.213, P.259, F.263 Chain C: P.58, I.61, L.62, A.65, N.66, P.75 9 PLIP interactions: 6 interactions with chain C, 3 interactions with chain B Hydrophobic interactions: C:P.58, C:I.61, C:A.65, C:P.75, B:L.213, B:P.259, B:F.263 Water bridges: C:N.66, C:N.66

3 x GOL: GLYCEROL(Non-functional Binders)

GOL.2: 5 residues within 4Å: Chain A: R.103, K.351, H.358, E.359 Chain C: G.232 7 PLIP interactions: 6 interactions with chain A, 1 interactions with chain C Hydrogen bonds: A:R.103, A:R.103, A:K.351, C:G.232 Water bridges: A:R.103, A:V.104, A:T.349 GOL.4: 5 residues within 4Å: Chain A: G.232 Chain B: R.103, K.351, H.358, E.359 7 PLIP interactions: 1 interactions with chain A, 6 interactions with chain B Hydrogen bonds: A:G.232, B:R.103, B:R.103, B:K.351 Water bridges: B:R.103, B:V.104, B:T.349 GOL.6: 5 residues within 4Å: Chain B: G.232 Chain C: R.103, K.351, H.358, E.359 7 PLIP interactions: 6 interactions with chain C, 1 interactions with chain B Hydrogen bonds: C:R.103, C:R.103, C:K.351, B:G.232 Water bridges: C:R.103, C:V.104, C:T.349

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Lupo, D. et al., The 1.3-A resolution structure of Nitrosomonas europaea Rh50 and mechanistic implications for NH3 transport by Rhesus family proteins. Proc.Natl.Acad.Sci.Usa (2007)

Release Date

2007-11-20

Peptides

Ammonium transporter family: ABC

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
A

C
A

Membrane

We predict this structure to be a membrane protein.
Show / Hide

Ammonium transporter family