SMTL ID : 3ba2.1

Cyanide bound Chlorin substituted Myoglobin

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.80 Å

Oligo State

monomer

Ligands

3 x SO4: SULFATE ION(Non-functional Binders)

SO4.1: 4 residues within 4Å: Chain A: A.57, S.58, E.59, D.60 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:A.57, A:E.59, A:D.60 SO4.2: 3 residues within 4Å: Chain A: H.81, H.82, E.83 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:E.83 SO4.3: 2 residues within 4Å: Chain A: Q.26, K.62 1 PLIP interactions: 1 interactions with chain A Salt bridges: A:K.62

1 x CYN: CYANIDE ION(Non-covalent)

CYN.4: 4 residues within 4Å: Chain A: F.43, H.64, V.68 Ligands: HKL.5 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:H.64

1 x HKL: Fe(III) pyropheophorbide-a methyl ester(Non-covalent)

HKL.5: 16 residues within 4Å: Chain A: T.39, K.42, F.43, V.67, V.68, P.88, L.89, S.92, H.93, H.97, I.99, Y.103, L.104, I.107, F.138 Ligands: CYN.4 18 PLIP interactions: 18 interactions with chain A, Hydrophobic interactions: A:F.43, A:F.43, A:F.43, A:V.67, A:V.68, A:L.89, A:H.97, A:I.99, A:I.99, A:I.99, A:Y.103, A:Y.103, A:L.104, A:F.138 Hydrogen bonds: A:S.92 pi-Stacking: A:H.97, A:H.97 Metal complexes: A:H.93

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Yi, J. et al., Cyanide bound Chlorin substituted Myoglobin. To be Published

Release Date

2008-11-11

Peptides

Myoglobin: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Myoglobin

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