SMTL ID : 3bam.1

RESTRICTION ENDONUCLEASE BAMHI COMPLEX WITH DNA AND MANGANESE IONS (POST-REACTIVE COMPLEX)

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.80 Å

Oligo State

homo-dimer

Ligands

1 x DT- DA- DT- DG: DNA (5'-D(*TP*AP*TP*G)-3')(Non-covalent)

DT-DA-DT-DG.1: 14 residues within 4Å: Chain A: C.9, A.10, T.11, A.12 Chain B: K.89, G.90, G.91, R.122, K.126 Chain C: K.146, R.155, E.161 Ligands: DG-DA-DT-DC-DC-DA-DT.2, MN.3 Protein-ligand interaction information (PLIP) not available

1 x DG- DA- DT- DC- DC- DA- DT: DNA (5'-D(P*GP*AP*TP*CP*CP*AP*TP*A)-3')(Non-covalent)

DG-DA-DT-DC-DC-DA-DT.2: 36 residues within 4Å: Chain A: T.3, G.4, G.5, A.6, T.7, C.8, C.9 Chain B: G.56, V.57, V.58, K.61, F.112, E.113, T.114, G.115, N.116, S.119, R.122, S.123, T.153, D.154, R.155, K.193, G.194, D.196, G.197, M.198, S.199, K.200 Chain C: N.116, R.155, S.195, M.198 Ligands: DT-DA-DT-DG.1, MN.3, MN.4 Protein-ligand interaction information (PLIP) not available

2 x MN: MANGANESE (II) ION(Non-covalent)

MN.3: 6 residues within 4Å: Chain B: P.92, D.94, E.111 Ligands: DT-DA-DT-DG.1, DG-DA-DT-DC-DC-DA-DT.2, MN.4 2 PLIP interactions: 1 interactions with chain B, 1 Ligand-Water interactions Metal complexes: B:D.94, H2O.3 MN.4: 4 residues within 4Å: Chain B: D.94, F.112 Ligands: DG-DA-DT-DC-DC-DA-DT.2, MN.3 3 PLIP interactions: 2 interactions with chain B, 1 Ligand-Water interactions Metal complexes: B:D.94, B:F.112, H2O.3

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Viadiu, H. et al., The role of metals in catalysis by the restriction endonuclease BamHI. Nat.Struct.Biol. (1998)

Release Date

1999-01-13

Peptides

PROTEIN (RESTRICTION ENDONUCLEASE BAMHI): BC

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

B
A

C
B

PROTEIN (RESTRICTION ENDONUCLEASE BAMHI)

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