SMTL ID : 3bb8.1

E1 Dehydrase H220K Mutant

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.35 Å

Oligo State

homo-dimer

Ligands

2 x PLP: PYRIDOXAL-5'-PHOSPHATE(Covalent)

PLP.1: 16 residues within 4Å: Chain A: S.85, G.86, S.87, N.90, F.120, T.122, T.123, D.191, C.193, D.194, S.215, Y.217, K.220, F.377 Chain B: W.247, N.288 11 PLIP interactions: 11 interactions with chain A Hydrophobic interactions: A:F.120, A:K.220 Hydrogen bonds: A:S.85, A:G.86, A:S.87, A:T.123, A:D.194, A:S.215, A:K.220 Salt bridges: A:K.220 pi-Stacking: A:F.120 PLP.3: 15 residues within 4Å: Chain A: W.247, N.288 Chain B: S.85, G.86, S.87, N.90, F.120, T.122, T.123, D.191, C.193, D.194, S.215, Y.217, K.220 10 PLIP interactions: 10 interactions with chain B Hydrophobic interactions: B:F.120, B:K.220 Hydrogen bonds: B:S.85, B:G.86, B:S.87, B:D.194, B:S.215, B:K.220 Salt bridges: B:K.220 pi-Stacking: B:F.120

2 x BEN: BENZAMIDINE(Non-functional Binders)

BEN.2: 5 residues within 4Å: Chain A: F.330, S.355, V.357, F.432, F.433 4 PLIP interactions: 4 interactions with chain A Hydrophobic interactions: A:V.357, A:F.432, A:F.433 Hydrogen bonds: A:F.433 BEN.4: 5 residues within 4Å: Chain B: F.330, S.355, V.357, F.432, F.433 5 PLIP interactions: 5 interactions with chain B Hydrophobic interactions: B:F.330, B:V.357, B:F.432, B:F.433 Hydrogen bonds: B:F.433

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Smith, P. et al., E1 Dehydrase H220K Mutant. To be Published

Release Date

2008-09-16

Peptides

CDP-4-keto-6-deoxy-D-glucose-3-dehydrase: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

CDP-4-keto-6-deoxy-D-glucose-3-dehydrase