SMTL ID : 3bbb.1

Crystal structure of the NM23-H2 transcription factor complex with dinucleotide d(AG)

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.30 Å

Oligo State

homo-hexamer

Ligands

4 x DG: 2'-DEOXYGUANOSINE-5'-MONOPHOSPHATE(Non-covalent)

DG.1: 7 residues within 4Å: Chain B: L.54, R.57, F.59, L.63, T.93, V.111, G.112 39 PLIP interactions: 8 interactions with chain F, 11 interactions with chain C, 8 interactions with chain B, 12 interactions with chain E Hydrophobic interactions: F:T.93, C:L.54, C:T.93, B:T.93, E:L.54, E:T.93 Hydrogen bonds: F:K.11, F:Y.51, F:Y.51, F:R.57, C:K.11, C:Y.51, C:R.104, C:N.114, E:K.11, E:Y.51, E:N.114, E:E.151 Water bridges: F:R.57, F:G.112, C:R.87, C:R.104, C:G.118, B:K.11, B:R.57, B:R.57, B:R.87, E:E.151, E:E.151, E:E.151 pi-Stacking: F:F.59, C:F.59, B:F.59, E:F.59, E:F.59 Salt bridges: C:K.11, B:R.57, E:K.11 pi-Cation interactions: B:F.59 DG.3: 8 residues within 4Å: Chain C: K.11, L.54, F.59, L.63, T.93, R.104, H.117 Ligands: DA.2 Protein-ligand interaction information (PLIP) not available DG.5: 7 residues within 4Å: Chain E: K.11, L.54, F.59, T.93, R.104, N.114 Ligands: DA.4 Protein-ligand interaction information (PLIP) not available DG.6: 11 residues within 4Å: Chain E: E.151 Chain F: K.11, Y.51, L.54, R.57, F.59, L.63, T.93, V.111, G.112, N.114 Protein-ligand interaction information (PLIP) not available

2 x DA: 2'-DEOXYADENOSINE-5'-MONOPHOSPHATE(Non-covalent)

DA.2: 8 residues within 4Å: Chain C: K.11, Y.51, L.63, T.93, V.111, G.112, N.114 Ligands: DG.3 Protein-ligand interaction information (PLIP) not available DA.4: 7 residues within 4Å: Chain E: K.11, Y.51, L.63, T.93, V.111, G.112 Ligands: DG.5 Protein-ligand interaction information (PLIP) not available

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Dexheimer, T.S. et al., NM23-H2 may play an indirect role in transcriptional activation of c-myc gene expression but does not cleave the nuclease hypersensitive element III1. Mol.Cancer Ther. (2009)

Release Date

2008-09-23

Peptides

Nucleoside diphosphate kinase B: ABCDEF

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

D
D

E
E

F
F

Nucleoside diphosphate kinase B

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