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SMTL ID : 3bbb.1
Crystal structure of the NM23-H2 transcription factor complex with dinucleotide d(AG)
Coordinates
PDB Format
Method
X-RAY DIFFRACTION 1.30 Å
Oligo State
homo-hexamer
Ligands
4 x
DG
:
2'-DEOXYGUANOSINE-5'-MONOPHOSPHATE
(Non-covalent)
DG.1:
7 residues within 4Å:
Chain B:
L.54
,
R.57
,
F.59
,
L.63
,
T.93
,
V.111
,
G.112
39
PLIP interactions
:
8 interactions with chain F
,
11 interactions with chain C
,
8 interactions with chain B
,
12 interactions with chain E
Hydrophobic interactions:
F:T.93
,
C:L.54
,
C:T.93
,
B:T.93
,
E:L.54
,
E:T.93
Hydrogen bonds:
F:K.11
,
F:Y.51
,
F:Y.51
,
F:R.57
,
C:K.11
,
C:Y.51
,
C:R.104
,
C:N.114
,
E:K.11
,
E:Y.51
,
E:N.114
,
E:E.151
Water bridges:
F:R.57
,
F:G.112
,
C:R.87
,
C:R.104
,
C:G.118
,
B:K.11
,
B:R.57
,
B:R.57
,
B:R.87
,
E:E.151
,
E:E.151
,
E:E.151
pi-Stacking:
F:F.59
,
C:F.59
,
B:F.59
,
E:F.59
,
E:F.59
Salt bridges:
C:K.11
,
B:R.57
,
E:K.11
pi-Cation interactions:
B:F.59
DG.3:
8 residues within 4Å:
Chain C:
K.11
,
L.54
,
F.59
,
L.63
,
T.93
,
R.104
,
H.117
Ligands:
DA.2
Protein-ligand interaction information (PLIP) not available
DG.5:
7 residues within 4Å:
Chain E:
K.11
,
L.54
,
F.59
,
T.93
,
R.104
,
N.114
Ligands:
DA.4
Protein-ligand interaction information (PLIP) not available
DG.6:
11 residues within 4Å:
Chain E:
E.151
Chain F:
K.11
,
Y.51
,
L.54
,
R.57
,
F.59
,
L.63
,
T.93
,
V.111
,
G.112
,
N.114
Protein-ligand interaction information (PLIP) not available
2 x
DA
:
2'-DEOXYADENOSINE-5'-MONOPHOSPHATE
(Non-covalent)
DA.2:
8 residues within 4Å:
Chain C:
K.11
,
Y.51
,
L.63
,
T.93
,
V.111
,
G.112
,
N.114
Ligands:
DG.3
Protein-ligand interaction information (PLIP) not available
DA.4:
7 residues within 4Å:
Chain E:
K.11
,
Y.51
,
L.63
,
T.93
,
V.111
,
G.112
Ligands:
DG.5
Protein-ligand interaction information (PLIP) not available
Links
RCSB
PDBe
PDBe-KB
PDBj
PDBsum
CATH
PLIP
Citation
Dexheimer, T.S. et al., NM23-H2 may play an indirect role in transcriptional activation of c-myc gene expression but does not cleave the nuclease hypersensitive element III1. Mol.Cancer Ther. (2009)
Release Date
2008-09-23
Peptides
Nucleoside diphosphate kinase B:
A
B
C
D
E
F
SMTL:PDB
SMTL Chain Id:
PDB Chain Id:
A
A
B
B
C
C
D
D
E
E
F
F
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Secondary Structure
None
DSSP
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Enhance Mismatches
Chain
Unique Chain
Rainbow
2° Structure
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Nucleoside diphosphate kinase B
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Related Entries With Identical Sequence
1nue.1
|
3bbf.1
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