SMTL ID : 3bcb.1

Crystal structure of mouse selenocysteine synthase, sodium phosphate soak

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.85 Å

Oligo State

homo-tetramer

Ligands

4 x CL: CHLORIDE ION(Non-functional Binders)

CL.1: 6 residues within 4Å: Chain A: S.241, S.242, K.243, R.323, K.324, P.352 Ligand excluded by PLIP CL.4: 6 residues within 4Å: Chain B: S.241, S.242, K.243, R.323, K.324, P.352 Ligand excluded by PLIP CL.7: 6 residues within 4Å: Chain C: S.241, S.242, K.243, R.323, K.324, P.352 Ligand excluded by PLIP CL.10: 6 residues within 4Å: Chain D: S.241, S.242, K.243, R.323, K.324, P.352 Ligand excluded by PLIP

8 x PO4: PHOSPHATE ION(Non-functional Binders)

PO4.2: 4 residues within 4Å: Chain A: R.79, S.80, Q.87, R.295 9 PLIP interactions: 9 interactions with chain A Hydrogen bonds: A:S.80, A:Q.87 Water bridges: A:R.57, A:R.79, A:S.80, A:R.295, A:R.295, A:R.295 Salt bridges: A:R.295 PO4.3: 2 residues within 4Å: Chain A: R.181, H.350 8 PLIP interactions: 8 interactions with chain A Water bridges: A:R.181, A:R.181, A:R.181, A:R.181, A:R.216, A:H.350 Salt bridges: A:R.181, A:H.350 PO4.5: 4 residues within 4Å: Chain B: R.79, S.80, Q.87, R.295 9 PLIP interactions: 9 interactions with chain B Hydrogen bonds: B:S.80, B:Q.87 Water bridges: B:R.57, B:R.79, B:S.80, B:R.295, B:R.295, B:R.295 Salt bridges: B:R.295 PO4.6: 2 residues within 4Å: Chain B: R.181, H.350 8 PLIP interactions: 8 interactions with chain B Water bridges: B:R.181, B:R.181, B:R.181, B:R.181, B:R.216, B:H.350 Salt bridges: B:R.181, B:H.350 PO4.8: 4 residues within 4Å: Chain C: R.79, S.80, Q.87, R.295 9 PLIP interactions: 9 interactions with chain C Hydrogen bonds: C:S.80, C:Q.87 Water bridges: C:R.57, C:R.79, C:S.80, C:R.295, C:R.295, C:R.295 Salt bridges: C:R.295 PO4.9: 2 residues within 4Å: Chain C: R.181, H.350 8 PLIP interactions: 8 interactions with chain C Water bridges: C:R.181, C:R.181, C:R.181, C:R.181, C:R.216, C:H.350 Salt bridges: C:R.181, C:H.350 PO4.11: 4 residues within 4Å: Chain D: R.79, S.80, Q.87, R.295 9 PLIP interactions: 9 interactions with chain D Hydrogen bonds: D:S.80, D:Q.87 Water bridges: D:R.57, D:R.79, D:S.80, D:R.295, D:R.295, D:R.295 Salt bridges: D:R.295 PO4.12: 2 residues within 4Å: Chain D: R.181, H.350 8 PLIP interactions: 8 interactions with chain D Water bridges: D:R.181, D:R.181, D:R.181, D:R.181, D:R.216, D:H.350 Salt bridges: D:R.181, D:H.350

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Ganichkin, O.M. et al., Structure and catalytic mechanism of eukaryotic selenocysteine synthase. J.Biol.Chem. (2008)

Release Date

2007-12-18

Peptides

O-phosphoseryl-tRNA(Sec) selenium transferase: ABCD

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
A

C
A

D
A

O-phosphoseryl-tRNA(Sec) selenium transferase

Related Entries With Identical Sequence