SMTL ID : 3bcw.1

Crystal structure of a duf861 family protein with a rmlc-like cupin fold (bb1179) from bordetella bronchiseptica rb50 at 1.60 A resolution

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.60 Å

Oligo State

homo-dimer

Ligands

1 x ACT: ACETATE ION(Non-functional Binders)

ACT.1: 5 residues within 4Å: Chain A: F.61, Q.62, S.63, M.99, W.107 1 PLIP interactions: 1 interactions with chain A Salt bridges: A:K.115

8 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.2: 2 residues within 4Å: Chain A: R.12, D.14 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:R.12, A:D.14 Water bridges: A:R.12, A:D.14, A:D.14 EDO.3: 5 residues within 4Å: Chain A: A.23, G.24, K.25, S.35, R.37 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:G.24, A:R.37, A:R.37 EDO.4: 6 residues within 4Å: Chain A: G.59, S.60, R.80, E.108, V.109, D.110 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:G.59, A:R.80, A:V.109, A:D.110 EDO.5: 3 residues within 4Å: Chain A: Y.68, V.119, H.121 1 PLIP interactions: 1 interactions with chain A Water bridges: A:E.50 EDO.6: 4 residues within 4Å: Chain A: T.40, A.41, F.42, E.43 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:E.43, A:E.43 Water bridges: A:H.5 EDO.7: 2 residues within 4Å: Chain A: R.9 Chain B: T.87 2 PLIP interactions: 2 interactions with chain B Water bridges: B:G.86, B:V.88 EDO.8: 5 residues within 4Å: Chain B: W.54, E.70, K.115, Y.117 Ligands: EDO.9 2 PLIP interactions: 2 interactions with chain B Hydrogen bonds: B:K.115, B:K.115 EDO.9: 5 residues within 4Å: Chain B: E.50, Y.68, V.119, H.121 Ligands: EDO.8 1 PLIP interactions: 1 interactions with chain B Hydrogen bonds: B:H.121

1 x PEG: DI(HYDROXYETHYL)ETHER(Non-functional Binders)

PEG.10: 6 residues within 4Å: Chain B: G.59, S.60, R.80, E.108, V.109, D.110 3 PLIP interactions: 3 interactions with chain B Hydrogen bonds: B:R.80, B:V.109 Water bridges: B:D.110

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Joint Center for Structural Genomics (JCSG), Crystal structure of domain of unknown function with a RmlC-like cupin fold (NP_887725.1) from Bordetella bronchiseptica at 1.60 A resolution. To be published

Release Date

2007-11-27

Peptides

Uncharacterized protein: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Uncharacterized protein