SMTL ID : 3be1.1

Dual specific bH1 Fab in complex with the extracellular domain of HER2/ErbB-2

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.90 Å

Oligo State

hetero-1-1-1-mer

Ligands

2 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Non-covalent)

NAG.1: 4 residues within 4Å: Chain A: C.230, A.232, N.237, G.240 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:N.237 NAG.2: 1 residues within 4Å: Chain A: N.508 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:N.508

1 x MES: 2-(N-MORPHOLINO)-ETHANESULFONIC ACID(Non-covalent)

MES.3: 5 residues within 4Å: Chain B: L.48, E.49, W.50 Chain C: T.101, F.102 2 PLIP interactions: 1 interactions with chain C, 1 interactions with chain B Hydrogen bonds: C:F.102, B:W.50

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Bostrom, J. et al., Variants of the antibody herceptin that interact with HER2 and VEGF at the antigen binding site. Science (2009)

Release Date

2008-11-18

Peptides

Receptor tyrosine-protein kinase erbB-2: A
Fab Fragment-Heavy Chain: B
Fab Fragment-Light Chain: C

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
H

C
L

Receptor tyrosine-protein kinase erbB-2

Fab Fragment-Heavy Chain

Fab Fragment-Light Chain

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