SMTL ID : 3be4.1

Crystal structure of Cryptosporidium parvum adenylate kinase cgd5_3360

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.60 Å

Oligo State

monomer

Ligands

1 x MG: MAGNESIUM ION(Non-functional Binders)

MG.1: 1 residues within 4Å: Ligands: AP5.2 No protein-ligand interaction detected (PLIP)

1 x AP5: BIS(ADENOSINE)-5'-PENTAPHOSPHATE(Non-covalent)

AP5.2: 33 residues within 4Å: Chain A: P.14, G.15, S.16, G.17, K.18, G.19, T.20, T.36, G.37, L.40, R.41, I.58, N.62, F.63, V.64, V.69, G.90, F.91, R.93, Q.97, R.128, R.132, I.141, Y.142, H.143, Y.146, R.165, D.167, R.176, L.204, P.205, P.206 Ligands: MG.1 44 PLIP interactions: 44 interactions with chain A Hydrogen bonds: A:G.15, A:S.16, A:G.17, A:K.18, A:G.19, A:T.20, A:T.20, A:T.36, A:V.64, A:R.93, A:R.93, A:Q.97, A:Q.97, A:R.128, A:R.128, A:R.128, A:Y.142, A:R.176, A:L.204 Water bridges: A:K.18, A:S.35, A:S.35, A:G.37, A:G.37, A:I.58, A:G.61, A:R.132, A:N.147, A:R.165 Salt bridges: A:K.18, A:K.18, A:K.18, A:R.41, A:R.93, A:R.93, A:R.132, A:R.132, A:R.165, A:R.165, A:R.165, A:R.176 pi-Stacking: A:P.206 pi-Cation interactions: A:R.93, A:R.128

2 x GOL: GLYCEROL(Non-functional Binders)

GOL.3: 6 residues within 4Å: Chain A: E.23, R.140, I.141, Y.142, N.147 Ligands: GOL.4 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:E.23, A:E.23, A:I.141, A:N.147 GOL.4: 5 residues within 4Å: Chain A: T.20, N.147, P.206, K.207 Ligands: GOL.3 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:N.147 Water bridges: A:T.20, A:N.147

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Wernimont, A.K. et al., Crystal structure of Cryptosporidium parvum adenylate kinase cgd5_3360. To be Published

Release Date

2007-12-18

Peptides

Adenylate kinase: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Adenylate kinase