SMTL ID : 3ber.1

Human DEAD-box RNA-helicase DDX47, conserved domain I in complex with AMP

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.40 Å

Oligo State

monomer

Ligands

1 x PO4: PHOSPHATE ION(Non-functional Binders)

PO4.1: 4 residues within 4Å: Chain A: G.147, G.170, R.171, D.174 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:D.174, A:D.174 Water bridges: A:G.147 Salt bridges: A:R.171

1 x AMP: ADENOSINE MONOPHOSPHATE(Non-covalent)

AMP.2: 14 residues within 4Å: Chain A: F.45, G.62, W.63, K.65, P.66, T.67, Q.70, T.89, G.90, S.91, G.92, K.93, T.94, Q.130 17 PLIP interactions: 17 interactions with chain A Hydrogen bonds: A:T.67, A:Q.70, A:Q.70, A:G.90, A:G.92, A:K.93, A:T.94, A:Q.130, A:Q.130 Water bridges: A:T.64, A:T.89, A:T.94, A:G.95, A:G.95 pi-Stacking: A:W.63, A:W.63, A:W.63

2 x PGE: TRIETHYLENE GLYCOL(Non-functional Binders)

PGE.3: 7 residues within 4Å: Chain A: S.151, S.155, R.171, D.174, H.175, N.178, T.179 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:S.155, A:S.155, A:N.178, A:N.178 PGE.4: 8 residues within 4Å: Chain A: L.211, I.214, R.216, R.218, R.236, A.237, A.238, L.239 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:L.211, A:R.216, A:R.216, A:R.218, A:R.218

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Schutz, P. et al., Comparative Structural Analysis of Human DEAD-Box RNA Helicases. Plos One (2010)

Release Date

2007-12-04

Peptides

Probable ATP-dependent RNA helicase DDX47: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Probable ATP-dependent RNA helicase DDX47