SMTL ID : 3bff.3 (3 other biounits)

class A beta-lactamase SED-G238C complexed with faropenem

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.90 Å

Oligo State

monomer

Ligands

1 x SCN: THIOCYANATE ION(Non-functional Binders)

SCN.1: 3 residues within 4Å: Chain A: P.148, G.149, D.150 No protein-ligand interaction detected (PLIP)

1 x FPM: (5R,6S)-6-(1-hydroxyethyl)-7-oxo-3-[(2R)-oxolan-2-yl]-4-thia-1-azabicyclo[3.2.0]hept-2-ene-2-carboxylic acid(Non-covalent)

FPM.2: 6 residues within 4Å: Chain A: K.68, M.69, T.70, K.111, A.114, H.115 7 PLIP interactions: 7 interactions with chain A Hydrogen bonds: A:K.68, A:T.70, A:T.70 Water bridges: A:K.111, A:K.111, A:H.115 Salt bridges: A:K.111

1 x SFR: (2R)-2-[(1S,2R)-1-carboxy-2-hydroxypropyl]-5-[(2R)-oxolan-2-yl]-2,3-dihydro-1,3-thiazole-4-carboxylic acid(Covalent)

SFR.3: 13 residues within 4Å: Chain A: C.43, S.44, K.47, W.79, S.104, N.106, E.140, N.144, T.190, K.208, T.209, G.210, A.211 14 PLIP interactions: 14 interactions with chain A Hydrophobic interactions: A:T.190 Hydrogen bonds: A:S.44, A:K.47, A:S.104, A:S.104, A:N.106, A:E.140, A:N.144, A:T.209, A:A.211 Water bridges: A:G.210, A:G.210 Salt bridges: A:K.208, A:K.248

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Pernot, L. et al., acyl-intermediate structures of the class A beta-lactamase SED-G238C. To be Published

Release Date

2007-12-18

Peptides

Class A beta-lactamase Sed1: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
C

Class A beta-lactamase Sed1

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