SMTL ID : 3bfm.1

Crystal structure of a biotin protein ligase-like protein of unknown function (tm1040_0394) from silicibacter sp. tm1040 at 1.70 A resolution

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.70 Å

Oligo State

homo-dimer

Ligands

4 x CA: CALCIUM ION(Non-covalent)

CA.1: 3 residues within 4Å: Chain A: Q.21, D.22, E.43 5 PLIP interactions: 3 interactions with chain A, 2 Ligand-Water interactions Metal complexes: A:Q.21, A:D.22, A:E.43, H2O.1, H2O.1 CA.2: 3 residues within 4Å: Chain A: A.37 Chain B: A.37 Ligands: CA.5 5 PLIP interactions: 1 interactions with chain A, 1 interactions with chain B, 3 Ligand-Water interactions Metal complexes: A:A.37, B:A.37, H2O.1, H2O.2, H2O.8 CA.4: 3 residues within 4Å: Chain B: Q.21, D.22, E.43 5 PLIP interactions: 3 interactions with chain B, 2 Ligand-Water interactions Metal complexes: B:Q.21, B:D.22, B:E.43, H2O.7, H2O.8 CA.5: 3 residues within 4Å: Chain A: A.37 Chain B: A.37 Ligands: CA.2 5 PLIP interactions: 1 interactions with chain A, 1 interactions with chain B, 3 Ligand-Water interactions Metal complexes: A:A.37, B:A.37, H2O.2, H2O.7, H2O.8

2 x 2PE: NONAETHYLENE GLYCOL(Non-covalent)

2PE.3: 5 residues within 4Å: Chain A: E.15, A.16, A.17, G.18, Y.42 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:A.16 Water bridges: A:Y.42 2PE.6: 5 residues within 4Å: Chain B: E.15, A.16, A.17, G.18, Y.42 1 PLIP interactions: 1 interactions with chain B Hydrogen bonds: B:A.16

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Joint Center for Structural Genomics (JCSG), Crystal structure of biotin protein ligase-like protein of unknown function (YP_612389.1) from Silicibacter sp. TM1040 at 1.70 A resolution. To be published

Release Date

2007-12-04

Peptides

Biotin protein ligase-like protein of unknown function: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
A

Biotin protein ligase-like protein of unknown function