SMTL ID : 3bg5.2 (2 other biounits)

Crystal Structure of Staphylococcus Aureus Pyruvate Carboxylase

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.80 Å

Oligo State

homo-dimer

Ligands

2 x MN: MANGANESE (II) ION(Non-covalent)

MN.1: 5 residues within 4Å: Chain A: D.565, K.735, H.764, H.766 Ligands: PYR.3 3 PLIP interactions: 3 interactions with chain A Metal complexes: A:D.565, A:H.764, A:H.766 MN.5: 5 residues within 4Å: Chain B: D.565, K.735, H.764, H.766 Ligands: PYR.7 3 PLIP interactions: 3 interactions with chain B Metal complexes: B:D.565, B:H.764, B:H.766

2 x BTI: 5-(HEXAHYDRO-2-OXO-1H-THIENO[3,4-D]IMIDAZOL-6-YL)PENTANAL(Covalent)

BTI.2: 1 residues within 4Å: Chain A: K.1135 No protein-ligand interaction detected (PLIP) BTI.6: 1 residues within 4Å: Chain B: K.1135 No protein-ligand interaction detected (PLIP)

2 x PYR: PYRUVIC ACID(Non-covalent)

PYR.3: 8 residues within 4Å: Chain A: R.564, D.565, Q.568, L.635, F.670, K.735, T.899 Ligands: MN.1 6 PLIP interactions: 6 interactions with chain A Hydrogen bonds: A:R.564, A:R.564, A:Q.568, A:K.735, A:T.899 Salt bridges: A:K.735 PYR.7: 10 residues within 4Å: Chain B: R.564, D.565, Q.568, G.602, L.635, R.637, F.670, K.735, T.899 Ligands: MN.5 9 PLIP interactions: 9 interactions with chain B Hydrogen bonds: B:R.564, B:R.564, B:Q.568, B:Q.568, B:K.735, B:T.899 Salt bridges: B:R.564, B:R.637, B:K.735

2 x ATP: ADENOSINE-5'-TRIPHOSPHATE(Non-covalent)

ATP.4: 16 residues within 4Å: Chain A: K.142, I.157, M.182, K.184, E.226, R.227, Y.228, I.229, H.234, Q.258, H.261, K.263, E.301, L.303, E.313, N.315 15 PLIP interactions: 15 interactions with chain A Hydrogen bonds: A:K.184, A:S.187, A:R.227, A:I.229, A:H.234, A:Q.258, A:N.315, A:N.315, A:R.317 Salt bridges: A:K.142, A:K.142, A:K.184, A:H.261, A:H.261, A:K.263 ATP.8: 21 residues within 4Å: Chain B: K.142, M.182, K.184, G.188, G.189, G.191, M.194, E.226, R.227, Y.228, I.229, H.234, Q.258, H.261, K.263, E.301, L.303, I.312, E.313, N.315, T.470 19 PLIP interactions: 19 interactions with chain B Hydrogen bonds: B:K.184, B:G.188, B:G.189, B:G.189, B:E.226, B:R.227, B:I.229, B:H.234, B:Q.258, B:H.261, B:E.301, B:E.313, B:N.315, B:T.470, B:T.470 Salt bridges: B:K.142, B:K.142, B:K.184, B:K.263

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Xiang, S. et al., Crystal structures of human and Staphylococcus aureus pyruvate carboxylase and molecular insights into the carboxyltransfer reaction. Nat.Struct.Mol.Biol. (2008)

Release Date

2008-02-26

Peptides

Pyruvate carboxylase: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
C

Pyruvate carboxylase

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