SMTL ID : 3bge.1

Crystal structure of the C-terminal fragment of AAA+ATPase from Haemophilus influenzae

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.85 Å

Oligo State

homo-octamer

Ligands

12 x SO4: SULFATE ION(Non-functional Binders)

SO4.1: 5 residues within 4Å: Chain A: N.156, Y.157, F.158, K.163, D.164 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:Y.157, A:F.158, A:D.164 SO4.2: 7 residues within 4Å: Chain B: Y.42, R.45, R.46 Chain E: Y.42, R.45, R.46 Chain H: L.131 5 PLIP interactions: 3 interactions with chain E, 2 interactions with chain B Water bridges: E:Y.42 Salt bridges: E:R.45, E:R.46, B:R.45, B:R.46 SO4.3: 4 residues within 4Å: Chain B: K.182, R.185 Chain F: P.96, R.173 6 PLIP interactions: 4 interactions with chain F, 2 interactions with chain B Water bridges: F:K.97, F:K.97, F:G.174 Salt bridges: F:R.173, B:K.182, B:R.185 SO4.4: 5 residues within 4Å: Chain C: N.156, Y.157, F.158, K.163, D.164 3 PLIP interactions: 3 interactions with chain C Hydrogen bonds: C:Y.157, C:F.158, C:D.164 SO4.5: 7 residues within 4Å: Chain D: Y.42, R.45, R.46 Chain F: L.131 Chain G: Y.42, R.45, R.46 5 PLIP interactions: 2 interactions with chain D, 3 interactions with chain G Salt bridges: D:R.45, D:R.46, G:R.45, G:R.46 Water bridges: G:Y.42 SO4.6: 4 residues within 4Å: Chain D: K.182, R.185 Chain H: P.96, R.173 6 PLIP interactions: 2 interactions with chain D, 4 interactions with chain H Salt bridges: D:K.182, D:R.185, H:R.173 Water bridges: H:K.97, H:K.97, H:G.174 SO4.7: 5 residues within 4Å: Chain E: N.156, Y.157, F.158, K.163, D.164 3 PLIP interactions: 3 interactions with chain E Hydrogen bonds: E:Y.157, E:F.158, E:D.164 SO4.8: 7 residues within 4Å: Chain B: L.131 Chain C: Y.42, R.45, R.46 Chain F: Y.42, R.45, R.46 5 PLIP interactions: 3 interactions with chain C, 2 interactions with chain F Water bridges: C:Y.42 Salt bridges: C:R.45, C:R.46, F:R.45, F:R.46 SO4.9: 4 residues within 4Å: Chain D: P.96, R.173 Chain F: K.182, R.185 6 PLIP interactions: 4 interactions with chain D, 2 interactions with chain F Water bridges: D:K.97, D:K.97, D:G.174 Salt bridges: D:R.173, F:K.182, F:R.185 SO4.10: 5 residues within 4Å: Chain G: N.156, Y.157, F.158, K.163, D.164 3 PLIP interactions: 3 interactions with chain G Hydrogen bonds: G:Y.157, G:F.158, G:D.164 SO4.11: 7 residues within 4Å: Chain A: Y.42, R.45, R.46 Chain D: L.131 Chain H: Y.42, R.45, R.46 5 PLIP interactions: 3 interactions with chain A, 2 interactions with chain H Water bridges: A:Y.42 Salt bridges: A:R.45, A:R.46, H:R.45, H:R.46 SO4.12: 4 residues within 4Å: Chain B: P.96, R.173 Chain H: K.182, R.185 6 PLIP interactions: 2 interactions with chain H, 4 interactions with chain B Salt bridges: H:K.182, H:R.185, B:R.173 Water bridges: B:K.97, B:K.97, B:G.174

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Ramagopal, U.A. et al., Crystal structure of the C-terminal fragment of AAA+ATPase from Haemophilus influenzae. To be Published

Release Date

2008-01-01

Peptides

Predicted ATPase: ABCDEFGH

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
A

D
B

E
A

F
B

G
A

H
B

Predicted ATPase