SMTL ID : 3bgg.1

Crystal structure of Human Orotidine 5'-monophosphate Decarboxylase complexed with BMP

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.93 Å

Oligo State

homo-dimer

Ligands

2 x BMP: 6-HYDROXYURIDINE-5'-PHOSPHATE(Non-covalent)

BMP.1: 18 residues within 4Å: Chain A: S.68, D.70, K.92, H.94, D.123, K.125, M.182, S.183, I.212, P.228, Q.241, Y.243, V.260, G.261, R.262 Chain B: D.128, I.129, T.132 18 PLIP interactions: 17 interactions with chain A, 1 interactions with chain B Hydrophobic interactions: A:I.212, A:P.228 Hydrogen bonds: A:S.68, A:D.70, A:K.92, A:D.123, A:K.125, A:S.183, A:S.183, A:S.183, A:Q.241, A:Y.243, A:Y.243, A:G.261, A:R.262, B:T.132 Water bridges: A:G.229 Salt bridges: A:R.262 BMP.2: 18 residues within 4Å: Chain A: D.128, I.129, T.132 Chain B: S.68, D.70, K.92, H.94, D.123, K.125, M.182, S.183, I.212, P.228, Q.241, Y.243, V.260, G.261, R.262 21 PLIP interactions: 19 interactions with chain B, 2 interactions with chain A Hydrophobic interactions: B:I.212, B:P.228 Hydrogen bonds: B:S.68, B:D.70, B:D.70, B:K.92, B:D.123, B:K.125, B:S.183, B:S.183, B:S.183, B:Q.241, B:Y.243, B:Y.243, B:Y.243, B:G.261, B:R.262, A:T.132, A:T.132 Water bridges: B:G.229 Salt bridges: B:R.262

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Liu, Y. et al., Crystal structure of Human Orotidine 5'-monophosphate Decarboxylase complexed with BMP. To be Published

Release Date

2007-12-11

Peptides

Uridine 5'-monophosphate synthase: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
A

Uridine 5'-monophosphate synthase

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