SMTL ID : 3bgj.1

Crystal Structure of Human Orotidine 5'-monophosphate Decarboxylase Covalently Modified by 6-iodo-UMP

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.00 Å

Oligo State

homo-dimer

Ligands

2 x U5P: URIDINE-5'-MONOPHOSPHATE(Covalent)

U5P.1: 17 residues within 4Å: Chain A: S.68, D.70, K.92, H.94, D.123, K.125, M.182, S.183, P.228, Q.241, Y.243, V.260, G.261, R.262 Chain B: D.128, I.129, T.132 20 PLIP interactions: 17 interactions with chain A, 3 interactions with chain B Hydrophobic interactions: A:P.228 Hydrogen bonds: A:S.68, A:D.70, A:K.92, A:K.125, A:S.183, A:S.183, A:S.183, A:Q.241, A:Y.243, A:G.261, A:R.262, B:D.128, B:T.132, B:T.132 Water bridges: A:G.229, A:G.229, A:G.263, A:G.263 Salt bridges: A:R.262 U5P.2: 16 residues within 4Å: Chain A: D.128, I.129, T.132 Chain B: S.68, D.70, K.92, H.94, D.123, K.125, M.182, S.183, P.228, Q.241, Y.243, G.261, R.262 18 PLIP interactions: 15 interactions with chain B, 3 interactions with chain A Hydrogen bonds: B:S.68, B:D.70, B:K.92, B:K.125, B:S.183, B:S.183, B:S.183, B:Q.241, B:Y.243, B:G.261, B:R.262, A:D.128, A:T.132, A:T.132 Water bridges: B:G.229, B:G.229, B:G.263 Salt bridges: B:R.262

1 x GOL: GLYCEROL(Non-functional Binders)

GOL.3: 3 residues within 4Å: Chain B: L.232, E.233, A.234 2 PLIP interactions: 2 interactions with chain B Hydrogen bonds: B:E.233, B:A.234

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Liu, Y. et al., Crystal Structure of Human Orotidine 5'-monophosphate Decarboxylase Covalently Modified by 6-iodo-UMP. To be Published

Release Date

2008-11-18

Peptides

Uridine 5'-monophosphate synthase: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Uridine 5'-monophosphate synthase

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