SMTL ID : 3bh3.1

Crystal structure of acetoacetate decarboxylase from Chromobacterium violaceum in complex with acetyl acetone Schiff base intermediate

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.10 Å

Oligo State

homo-12-mer

Ligands

12 x PNH: pentan-2-one(Covalent)

PNH.1: 9 residues within 4Å: Chain A: F.27, R.30, M.66, F.72, Y.75, M.97, P.104, F.114, K.116 4 PLIP interactions: 4 interactions with chain A Hydrophobic interactions: A:F.72, A:F.114, A:K.116 Hydrogen bonds: A:R.30 PNH.2: 6 residues within 4Å: Chain B: R.30, F.72, Y.75, P.104, F.114, K.116 7 PLIP interactions: 7 interactions with chain B Hydrophobic interactions: B:F.72, B:F.114, B:F.114, B:K.116 Hydrogen bonds: B:R.30, B:R.30, B:Y.75 PNH.3: 7 residues within 4Å: Chain C: R.30, Y.75, M.97, P.104, F.114, K.116, L.234 4 PLIP interactions: 4 interactions with chain C Hydrophobic interactions: C:F.114, C:K.116 Hydrogen bonds: C:R.30, C:R.30 PNH.4: 9 residues within 4Å: Chain D: F.27, R.30, M.66, Y.75, M.97, P.104, F.114, K.116, L.234 5 PLIP interactions: 5 interactions with chain D Hydrophobic interactions: D:F.114, D:K.116 Hydrogen bonds: D:R.30, D:R.30, D:Y.75 PNH.5: 9 residues within 4Å: Chain E: F.27, R.30, M.66, F.72, Y.75, M.97, P.104, F.114, K.116 4 PLIP interactions: 4 interactions with chain E Hydrophobic interactions: E:F.72, E:F.114, E:K.116 Hydrogen bonds: E:R.30 PNH.6: 6 residues within 4Å: Chain F: R.30, F.72, Y.75, P.104, F.114, K.116 7 PLIP interactions: 7 interactions with chain F Hydrophobic interactions: F:F.72, F:F.114, F:F.114, F:K.116 Hydrogen bonds: F:R.30, F:R.30, F:Y.75 PNH.7: 7 residues within 4Å: Chain G: R.30, Y.75, M.97, P.104, F.114, K.116, L.234 4 PLIP interactions: 4 interactions with chain G Hydrophobic interactions: G:F.114, G:K.116 Hydrogen bonds: G:R.30, G:R.30 PNH.8: 9 residues within 4Å: Chain H: F.27, R.30, M.66, Y.75, M.97, P.104, F.114, K.116, L.234 5 PLIP interactions: 5 interactions with chain H Hydrophobic interactions: H:F.114, H:K.116 Hydrogen bonds: H:R.30, H:R.30, H:Y.75 PNH.9: 9 residues within 4Å: Chain I: F.27, R.30, M.66, F.72, Y.75, M.97, P.104, F.114, K.116 4 PLIP interactions: 4 interactions with chain I Hydrophobic interactions: I:F.72, I:F.114, I:K.116 Hydrogen bonds: I:R.30 PNH.10: 6 residues within 4Å: Chain J: R.30, F.72, Y.75, P.104, F.114, K.116 7 PLIP interactions: 7 interactions with chain J Hydrophobic interactions: J:F.72, J:F.114, J:F.114, J:K.116 Hydrogen bonds: J:R.30, J:R.30, J:Y.75 PNH.11: 7 residues within 4Å: Chain K: R.30, Y.75, M.97, P.104, F.114, K.116, L.234 4 PLIP interactions: 4 interactions with chain K Hydrophobic interactions: K:F.114, K:K.116 Hydrogen bonds: K:R.30, K:R.30 PNH.12: 9 residues within 4Å: Chain L: F.27, R.30, M.66, Y.75, M.97, P.104, F.114, K.116, L.234 5 PLIP interactions: 5 interactions with chain L Hydrophobic interactions: L:F.114, L:K.116 Hydrogen bonds: L:R.30, L:R.30, L:Y.75

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Ho, M.C. et al., The origin of the electrostatic perturbation in acetoacetate decarboxylase. Nature (2009)

Release Date

2008-12-23

Peptides

Acetoacetate decarboxylase: ABCDEFGHIJKL

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

D
D

E
A

F
B

G
C

H
D

I
A

J
B

K
C

L
D

Acetoacetate decarboxylase

Related Entries With Identical Sequence