SMTL ID : 3bhg.1

Crystal structure of adenylosuccinate lyase from Legionella pneumophila

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.90 Å

Oligo State

homo-tetramer

Ligands

8 x SO4: SULFATE ION(Non-functional Binders)

SO4.1: 6 residues within 4Å: Chain A: R.39, H.94, D.95, V.96, S.126, N.130 8 PLIP interactions: 8 interactions with chain A Hydrogen bonds: A:D.95, A:V.96, A:S.126, A:N.130 Water bridges: A:R.39, A:D.95 Salt bridges: A:R.39, A:H.94 SO4.2: 2 residues within 4Å: Chain A: H.174 Chain D: H.94 6 PLIP interactions: 1 interactions with chain C, 3 interactions with chain D, 2 interactions with chain A Water bridges: C:N.306, D:Q.250, D:Q.250, A:H.174 Salt bridges: D:H.94, A:H.174 SO4.4: 6 residues within 4Å: Chain B: R.39, H.94, D.95, V.96, S.126, N.130 7 PLIP interactions: 7 interactions with chain B Hydrogen bonds: B:D.95, B:V.96, B:S.126, B:N.130 Water bridges: B:R.39 Salt bridges: B:R.39, B:H.94 SO4.5: 2 residues within 4Å: Chain B: H.174 Chain C: H.94 7 PLIP interactions: 3 interactions with chain C, 1 interactions with chain D, 3 interactions with chain B Water bridges: C:Q.250, C:Q.250, D:N.306, B:T.173, B:H.174 Salt bridges: C:H.94, B:H.174 SO4.7: 6 residues within 4Å: Chain C: R.39, H.94, D.95, V.96, S.126, N.130 8 PLIP interactions: 8 interactions with chain C Hydrogen bonds: C:D.95, C:V.96, C:S.126, C:N.130 Water bridges: C:R.39, C:D.95 Salt bridges: C:R.39, C:H.94 SO4.8: 2 residues within 4Å: Chain B: H.94 Chain C: H.174 6 PLIP interactions: 2 interactions with chain C, 3 interactions with chain B, 1 interactions with chain A Water bridges: C:H.174, B:Q.250, B:Q.250, A:N.306 Salt bridges: C:H.174, B:H.94 SO4.10: 6 residues within 4Å: Chain D: R.39, H.94, D.95, V.96, S.126, N.130 7 PLIP interactions: 7 interactions with chain D Hydrogen bonds: D:D.95, D:V.96, D:S.126, D:N.130 Water bridges: D:R.39 Salt bridges: D:R.39, D:H.94 SO4.11: 2 residues within 4Å: Chain A: H.94 Chain D: H.174 7 PLIP interactions: 3 interactions with chain D, 3 interactions with chain A, 1 interactions with chain B Water bridges: D:T.173, D:H.174, A:Q.250, A:Q.250, B:N.306 Salt bridges: D:H.174, A:H.94

4 x GOL: GLYCEROL(Non-functional Binders)

GOL.3: 7 residues within 4Å: Chain A: N.131, Y.134, I.206, P.207, E.252, H.254, I.257 6 PLIP interactions: 6 interactions with chain A Hydrogen bonds: A:E.252, A:E.252, A:H.254, A:H.254 Water bridges: A:E.127, A:N.130 GOL.6: 7 residues within 4Å: Chain B: N.131, Y.134, I.206, P.207, E.252, H.254, I.257 3 PLIP interactions: 3 interactions with chain B Hydrogen bonds: B:E.252, B:H.254 Water bridges: B:N.130 GOL.9: 7 residues within 4Å: Chain C: N.131, Y.134, I.206, P.207, E.252, H.254, I.257 6 PLIP interactions: 6 interactions with chain C Hydrogen bonds: C:E.252, C:E.252, C:H.254, C:H.254 Water bridges: C:E.127, C:N.130 GOL.12: 7 residues within 4Å: Chain D: N.131, Y.134, I.206, P.207, E.252, H.254, I.257 3 PLIP interactions: 3 interactions with chain D Hydrogen bonds: D:E.252, D:H.254 Water bridges: D:N.130

Links

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Citation

Chang, C. et al., Crystal structure of adenylosuccinate lyase from Legionella pneumophila. To be Published

Release Date

2007-12-04

Peptides

Adenylosuccinate lyase: ABCD

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
A

C
A

D
A

Adenylosuccinate lyase