SMTL ID : 3bi7.1

Crystal structure of the SRA domain of E3 ubiquitin-protein ligase UHRF1

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.70 Å

Oligo State

monomer

Ligands

1 x SO4: SULFATE ION(Non-functional Binders)

SO4.1: 3 residues within 4Å: Chain A: R.19, F.20 Ligands: UNL.6 3 PLIP interactions: 3 interactions with chain A Water bridges: A:R.19, A:R.19 Salt bridges: A:R.19

4 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.2: 2 residues within 4Å: Chain A: V.22, H.33 No protein-ligand interaction detected (PLIP) EDO.3: 3 residues within 4Å: Chain A: F.20, V.22 Ligands: UNL.6 No protein-ligand interaction detected (PLIP) EDO.4: 4 residues within 4Å: Chain A: V.58, D.59, H.60, N.132 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:D.59 Water bridges: A:D.57, A:N.132 EDO.5: 1 residues within 4Å: Chain A: D.106 No protein-ligand interaction detected (PLIP)

1 x UNL: UNKNOWN LIGAND

UNL.6: 5 residues within 4Å: Chain A: F.20, R.21, V.22 Ligands: SO4.1, EDO.3 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:R.21, A:V.22 Water bridges: A:K.128, A:K.128, A:N.141

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Avvakumov, G.V. et al., Structural basis for recognition of hemi-methylated DNA by the SRA domain of human UHRF1. Nature (2008)

Release Date

2007-12-18

Peptides

E3 ubiquitin-protein ligase UHRF1: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

E3 ubiquitin-protein ligase UHRF1

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