SMTL ID : 3bie.1

X-ray structure of E coli AlkB bound to dsDNA containing 1meA/T with Mn and 2KG

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.68 Å

Oligo State

monomer

Ligands

1 x MN: MANGANESE (II) ION(Non-covalent)

MN.1: 4 residues within 4Å: Chain A: H.119, D.121, H.175 Ligands: AKG.2 4 PLIP interactions: 3 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:H.119, A:D.121, A:H.175, H2O.2

1 x AKG: 2-OXOGLUTARIC ACID(Non-covalent)

AKG.2: 15 residues within 4Å: Chain A: L.106, N.108, Y.110, L.116, H.119, D.121, S.133, H.175, I.177, R.192, N.194, T.196, R.198 Chain B: A.7 Ligands: MN.1 12 PLIP interactions: 12 interactions with chain A Hydrophobic interactions: A:L.116, A:I.177 Hydrogen bonds: A:N.108, A:S.133, A:S.133, A:T.196 Water bridges: A:N.194, A:R.198, A:R.198 Salt bridges: A:H.119, A:R.192, A:R.198

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Yang, C.-G. et al., Crystal structures of DNA/RNA repair enzymes AlkB and ABH2 bound to dsDNA. Nature (2008)

Release Date

2008-04-22

Peptides

Alpha-ketoglutarate-dependent dioxygenase alkB: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Alpha-ketoglutarate-dependent dioxygenase alkB