SMTL ID : 3bif.1

6-PHOSPHOFRUCTO-2-KINASE/FRUCTOSE-2,6-BISPHOSPHATASE EMPTY 6-PF-2K ACTIVE SITE

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.30 Å

Oligo State

homo-dimer

Ligands

4 x BOG: octyl beta-D-glucopyranoside(Non-covalent)

BOG.1: 12 residues within 4Å: Chain A: R.102, K.103, A.106, L.110, T.132, T.133, R.136, M.139, I.140, C.196, Y.197, S.200 15 PLIP interactions: 15 interactions with chain A Hydrophobic interactions: A:K.103, A:L.110, A:I.140 Hydrogen bonds: A:T.132, A:T.132, A:T.132, A:T.133, A:R.136, A:C.196, A:S.200 Water bridges: A:R.102, A:R.136, A:S.200 Salt bridges: A:R.102, A:R.136 BOG.2: 6 residues within 4Å: Chain A: F.299, F.320, L.323, V.375, E.378, L.379 6 PLIP interactions: 6 interactions with chain A Hydrophobic interactions: A:F.299, A:F.320, A:L.323, A:V.375, A:E.378, A:L.379 BOG.6: 12 residues within 4Å: Chain B: R.102, K.103, A.106, L.110, T.132, T.133, R.136, M.139, I.140, C.196, Y.197, S.200 14 PLIP interactions: 14 interactions with chain B Hydrophobic interactions: B:K.103, B:L.110, B:I.140 Hydrogen bonds: B:T.132, B:T.132, B:T.133, B:R.136, B:C.196, B:S.200 Water bridges: B:R.102, B:R.136, B:S.200 Salt bridges: B:R.102, B:R.136 BOG.7: 6 residues within 4Å: Chain B: F.299, F.320, L.323, V.375, E.378, L.379 6 PLIP interactions: 6 interactions with chain B Hydrophobic interactions: B:F.299, B:F.320, B:L.323, B:V.375, B:E.378, B:L.379

4 x PO4: PHOSPHATE ION(Non-functional Binders)

PO4.3: 7 residues within 4Å: Chain A: R.255, H.256, N.262, R.305, E.325, H.390, Q.391 9 PLIP interactions: 9 interactions with chain A Hydrogen bonds: A:N.262, A:E.325, A:E.325, A:Q.391 Water bridges: A:Q.391 Salt bridges: A:R.255, A:H.256, A:R.305, A:H.390 PO4.4: 6 residues within 4Å: Chain A: Y.336, R.350, K.354, Y.365, Q.391, R.395 12 PLIP interactions: 12 interactions with chain A Hydrogen bonds: A:Y.336, A:Y.336, A:Y.336, A:Y.365, A:Q.391 Water bridges: A:R.350, A:R.350, A:R.395, A:R.395 Salt bridges: A:R.350, A:K.354, A:R.395 PO4.8: 7 residues within 4Å: Chain B: R.255, H.256, N.262, R.305, E.325, H.390, Q.391 10 PLIP interactions: 10 interactions with chain B Hydrogen bonds: B:N.262, B:E.325, B:E.325, B:E.325, B:Q.391 Water bridges: B:Q.391 Salt bridges: B:R.255, B:H.256, B:R.305, B:H.390 PO4.9: 6 residues within 4Å: Chain B: Y.336, R.350, K.354, Y.365, Q.391, R.395 11 PLIP interactions: 11 interactions with chain B Hydrogen bonds: B:Y.336, B:Y.336, B:Q.391 Water bridges: B:Y.336, B:R.350, B:R.350, B:R.395, B:R.395 Salt bridges: B:R.350, B:K.354, B:R.395

2 x SIN: SUCCINIC ACID(Non-covalent)

SIN.5: 8 residues within 4Å: Chain A: G.75, R.78, F.91, A.129, T.130, R.136, R.193, Y.197 7 PLIP interactions: 7 interactions with chain A Hydrogen bonds: A:T.130, A:R.193, A:Y.197 Water bridges: A:V.74, A:R.136 Salt bridges: A:R.78, A:R.136 SIN.10: 8 residues within 4Å: Chain B: G.75, R.78, F.91, A.129, T.130, R.136, R.193, Y.197 6 PLIP interactions: 6 interactions with chain B Hydrogen bonds: B:T.130, B:R.193 Water bridges: B:V.74, B:R.136 Salt bridges: B:R.78, B:R.136

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Yuen, M.H. et al., A switch in the kinase domain of rat testis 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase. Biochemistry (1999)

Release Date

1999-09-29

Peptides

PROTEIN (6-PHOSPHOFRUCTO-2-KINASE/ FRUCTOSE-2,6-BISPHOSPHATASE): AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
A

PROTEIN (6-PHOSPHOFRUCTO-2-KINASE/ FRUCTOSE-2,6-BISPHOSPHATASE)