SMTL ID : 3bj9.1

Crystal structure of the Surrogate Light Chain Variable Domain VpreBJ

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.00 Å

Oligo State

monomer

Ligands

3 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.1: 5 residues within 4Å: Chain A: Q.58, G.59, P.60, Q.61, V.62 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:Q.58, A:Q.61 EDO.2: 5 residues within 4Å: Chain A: Q.37, R.45, L.47, P.63, F.66 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:Q.37, A:Q.37 Water bridges: A:R.39, A:R.45 EDO.3: 3 residues within 4Å: Chain A: P.6, S.106, G.107 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:P.6, A:Q.109 Water bridges: A:Y.93, A:S.106, A:S.106

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Morstadt, L. et al., Engineering and characterization of a single chain surrogate light chain variable domain. Protein Sci. (2008)

Release Date

2008-03-04

Peptides

Immunoglobulin iota chain, Immunoglobulin lambda-like polypeptide 1: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
1

Immunoglobulin iota chain, Immunoglobulin lambda-like polypeptide 1