SMTL ID : 3bjk.1

Crystal structure of HI0827, a hexameric broad specificity acyl-coenzyme A thioesterase: The Asp44Ala mutant enzyme

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.90 Å

Oligo State

homo-hexamer

Ligands

3 x CIT: CITRIC ACID(Non-functional Binders)

CIT.1: 8 residues within 4Å: Chain A: K.51, V.58, V.59, T.60 Chain B: N.28, A.29, N.30 Ligands: EDO.8 10 PLIP interactions: 6 interactions with chain A, 4 interactions with chain B Hydrogen bonds: A:K.51, A:V.58, A:T.60, B:N.28 Water bridges: A:T.60, B:A.29, B:A.29, B:N.30 Salt bridges: A:K.51, A:K.51 CIT.2: 5 residues within 4Å: Chain A: K.86, G.88, R.89, S.90, S.91 7 PLIP interactions: 7 interactions with chain A Hydrogen bonds: A:R.89, A:R.89, A:S.90, A:S.91, A:S.91, A:S.91 Salt bridges: A:K.86 CIT.16: 4 residues within 4Å: Chain D: G.88, R.89, S.90, S.91 6 PLIP interactions: 6 interactions with chain D Hydrogen bonds: D:R.89, D:S.90, D:S.91, D:S.91, D:S.91 Water bridges: D:V.87

25 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.3: 7 residues within 4Å: Chain A: V.15, L.16, L.17, I.48, E.52 Chain D: R.19, K.101 Ligand excluded by PLIP EDO.4: 5 residues within 4Å: Chain A: R.19, C.79, Y.81, K.101, R.111 Ligand excluded by PLIP EDO.5: 3 residues within 4Å: Chain A: F.68, I.69 Chain B: V.61 Ligand excluded by PLIP EDO.6: 5 residues within 4Å: Chain A: R.135, E.136, N.137, N.138, L.141 Ligand excluded by PLIP EDO.7: 4 residues within 4Å: Chain A: H.55, P.134, E.136, N.137 Ligand excluded by PLIP EDO.8: 7 residues within 4Å: Chain A: T.60 Chain B: I.33, G.35, I.38, F.68, K.70 Ligands: CIT.1 Ligand excluded by PLIP EDO.9: 6 residues within 4Å: Chain B: V.15, L.16, L.17, I.48, E.52 Chain E: R.19 Ligand excluded by PLIP EDO.10: 6 residues within 4Å: Chain A: G.36, W.37, S.40 Chain B: G.36, W.37, S.40 Ligand excluded by PLIP EDO.11: 6 residues within 4Å: Chain B: L.49, G.82, Q.83, C.84, A.144, L.147 Ligand excluded by PLIP EDO.12: 4 residues within 4Å: Chain B: Q.83, C.84, L.85, I.148 Ligand excluded by PLIP EDO.13: 7 residues within 4Å: Chain C: V.15, L.16, L.17, I.48, E.52 Chain F: R.19, K.101 Ligand excluded by PLIP EDO.14: 6 residues within 4Å: Chain C: L.49, Q.83, C.84, K.143, A.144, L.147 Ligand excluded by PLIP EDO.15: 4 residues within 4Å: Chain C: P.24, T.27, G.31, V.74 Ligand excluded by PLIP EDO.17: 6 residues within 4Å: Chain A: R.19 Chain D: V.15, L.16, L.17, I.48, E.52 Ligand excluded by PLIP EDO.18: 4 residues within 4Å: Chain D: H.55, P.134, E.136, N.137 Ligand excluded by PLIP EDO.19: 5 residues within 4Å: Chain D: R.135, E.136, N.137, N.138, L.141 Ligand excluded by PLIP EDO.20: 7 residues within 4Å: Chain D: V.15, G.82, Q.83, C.84, K.143, A.144, L.147 Ligand excluded by PLIP EDO.21: 5 residues within 4Å: Chain D: I.69, K.70, W.99, Y.112, C.113 Ligand excluded by PLIP EDO.22: 7 residues within 4Å: Chain D: K.13, G.14, Y.81, G.82, Q.83, K.95, E.97 Ligand excluded by PLIP EDO.23: 5 residues within 4Å: Chain C: W.37, S.40 Chain D: G.36, W.37, S.40 Ligand excluded by PLIP EDO.24: 6 residues within 4Å: Chain B: R.19 Chain E: V.15, L.16, L.17, I.48, E.52 Ligand excluded by PLIP EDO.25: 7 residues within 4Å: Chain E: L.49, G.82, Q.83, C.84, K.143, A.144, L.147 Ligand excluded by PLIP EDO.26: 6 residues within 4Å: Chain E: G.36, W.37, S.40 Chain F: G.36, W.37, S.40 Ligand excluded by PLIP EDO.27: 7 residues within 4Å: Chain B: L.21, M.23 Chain E: K.51, V.58 Chain F: N.28, A.29, N.30 Ligand excluded by PLIP EDO.28: 7 residues within 4Å: Chain C: R.19, K.101 Chain F: V.15, L.16, L.17, I.48, E.52 Ligand excluded by PLIP

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Willis, M.A. et al., Structure of YciA from Haemophilus influenzae (HI0827), a Hexameric Broad Specificity Acyl-Coenzyme A Thioesterase. Biochemistry (2008)

Release Date

2008-02-26

Peptides

Acyl-CoA thioester hydrolase HI0827: ABCDEF

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

D
D

E
E

F
F

Acyl-CoA thioester hydrolase HI0827